Protein–RNA interactions for Protein: P0C091

FREM3, FRAS1-related extracellular matrix protein 3, humanhuman

Predictions only

Length 2,139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3P0C091 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC17.54■□□□□ 0.4
FREM3P0C091 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
FREM3P0C091 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC17.54■□□□□ 0.4
FREM3P0C091 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
FREM3P0C091 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC17.54■□□□□ 0.4
FREM3P0C091 FSCN1P1-201ENST00000568912 1481 ntBASIC17.54■□□□□ 0.4
FREM3P0C091 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
FREM3P0C091 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
FREM3P0C091 PWWP2AP1-201ENST00000429776 2273 ntBASIC17.54■□□□□ 0.4
FREM3P0C091 AC116562.4-201ENST00000641316 2276 ntBASIC17.54■□□□□ 0.4
FREM3P0C091 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
FREM3P0C091 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
FREM3P0C091 HIST1H2APS4-201ENST00000362070 348 ntBASIC17.54■□□□□ 0.4
FREM3P0C091 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC17.54■□□□□ 0.4
FREM3P0C091 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC17.54■□□□□ 0.4
FREM3P0C091 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC17.54■□□□□ 0.4
FREM3P0C091 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
FREM3P0C091 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
FREM3P0C091 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
FREM3P0C091 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
FREM3P0C091 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
FREM3P0C091 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
FREM3P0C091 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
FREM3P0C091 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
FREM3P0C091 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
FREM3P0C091 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
FREM3P0C091 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
FREM3P0C091 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
FREM3P0C091 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
FREM3P0C091 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.53■□□□□ 0.4
FREM3P0C091 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC17.53■□□□□ 0.4
FREM3P0C091 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC17.53■□□□□ 0.4
FREM3P0C091 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC17.53■□□□□ 0.4
FREM3P0C091 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC17.53■□□□□ 0.4
FREM3P0C091 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC17.53■□□□□ 0.4
FREM3P0C091 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
FREM3P0C091 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
FREM3P0C091 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
FREM3P0C091 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
FREM3P0C091 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC17.53■□□□□ 0.4
FREM3P0C091 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC17.53■□□□□ 0.4
FREM3P0C091 AC087289.5-201ENST00000586076 3175 ntBASIC17.53■□□□□ 0.4
FREM3P0C091 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
FREM3P0C091 DERL1-203ENST00000419562 918 ntTSL 2 BASIC17.53■□□□□ 0.4
FREM3P0C091 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.53■□□□□ 0.4
FREM3P0C091 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC17.53■□□□□ 0.4
FREM3P0C091 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC17.53■□□□□ 0.4
FREM3P0C091 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC17.53■□□□□ 0.4
FREM3P0C091 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC17.53■□□□□ 0.4
FREM3P0C091 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
FREM3P0C091 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
FREM3P0C091 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
FREM3P0C091 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC17.53■□□□□ 0.4
FREM3P0C091 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
FREM3P0C091 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
FREM3P0C091 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
FREM3P0C091 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
FREM3P0C091 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
FREM3P0C091 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
FREM3P0C091 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
FREM3P0C091 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC17.52■□□□□ 0.4
FREM3P0C091 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC17.52■□□□□ 0.4
FREM3P0C091 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
FREM3P0C091 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
FREM3P0C091 AC004951.3-201ENST00000418645 1148 ntBASIC17.52■□□□□ 0.4
FREM3P0C091 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC17.52■□□□□ 0.4
FREM3P0C091 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC17.52■□□□□ 0.4
FREM3P0C091 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
FREM3P0C091 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
FREM3P0C091 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC17.52■□□□□ 0.4
FREM3P0C091 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
FREM3P0C091 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
FREM3P0C091 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
FREM3P0C091 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC17.52■□□□□ 0.39
FREM3P0C091 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.39
FREM3P0C091 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
FREM3P0C091 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
FREM3P0C091 AC104417.2-201ENST00000562989 1793 ntBASIC17.52■□□□□ 0.39
FREM3P0C091 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
FREM3P0C091 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
FREM3P0C091 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
FREM3P0C091 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
FREM3P0C091 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC17.51■□□□□ 0.39
FREM3P0C091 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC17.51■□□□□ 0.39
FREM3P0C091 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC17.51■□□□□ 0.39
FREM3P0C091 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
FREM3P0C091 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
FREM3P0C091 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
FREM3P0C091 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
FREM3P0C091 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC17.51■□□□□ 0.39
FREM3P0C091 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC17.51■□□□□ 0.39
FREM3P0C091 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
FREM3P0C091 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
FREM3P0C091 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
FREM3P0C091 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
FREM3P0C091 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
FREM3P0C091 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC17.51■□□□□ 0.39
FREM3P0C091 KRT8P41-201ENST00000533985 1514 ntBASIC17.51■□□□□ 0.39
FREM3P0C091 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
FREM3P0C091 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms