Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 MAL2-203ENST00000534619 578 ntTSL 4 BASIC2.02□□□□□ -2.09
LINC00643Q86TS7 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC2.02□□□□□ -2.09
LINC00643Q86TS7 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC2.02□□□□□ -2.09
LINC00643Q86TS7 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC2.02□□□□□ -2.09
LINC00643Q86TS7 AC009117.1-201ENST00000563948 554 ntBASIC2.02□□□□□ -2.09
LINC00643Q86TS7 AC234775.3-201ENST00000564612 656 ntBASIC2.02□□□□□ -2.09
LINC00643Q86TS7 DUXAP4-201ENST00000603046 613 ntBASIC2.02□□□□□ -2.09
LINC00643Q86TS7 AL034374.2-201ENST00000605281 548 ntBASIC2.02□□□□□ -2.09
LINC00643Q86TS7 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC2.02□□□□□ -2.09
LINC00643Q86TS7 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC2.02□□□□□ -2.09
LINC00643Q86TS7 AC097467.3-215ENST00000609486 793 ntTSL 5 BASIC2.02□□□□□ -2.09
LINC00643Q86TS7 AC097467.3-214ENST00000610249 843 ntTSL 5 BASIC2.02□□□□□ -2.09
LINC00643Q86TS7 AL162274.2-201ENST00000614406 332 ntBASIC2.02□□□□□ -2.09
LINC00643Q86TS7 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC2.02□□□□□ -2.09
LINC00643Q86TS7 PACRG-211ENST00000621363 360 ntTSL 5 BASIC2.02□□□□□ -2.09
LINC00643Q86TS7 AC112200.1-201ENST00000625015 234 ntBASIC2.02□□□□□ -2.09
LINC00643Q86TS7 AF001550.2-201ENST00000636643 217 ntBASIC2.02□□□□□ -2.09
LINC00643Q86TS7 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.02□□□□□ -2.09
LINC00643Q86TS7 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
LINC00643Q86TS7 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
LINC00643Q86TS7 CDY3P-201ENST00000454543 1618 ntBASIC2.02□□□□□ -2.09
LINC00643Q86TS7 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC2.01□□□□□ -2.09
LINC00643Q86TS7 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
LINC00643Q86TS7 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC2.01□□□□□ -2.09
LINC00643Q86TS7 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
LINC00643Q86TS7 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.01□□□□□ -2.09
LINC00643Q86TS7 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
LINC00643Q86TS7 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC2.01□□□□□ -2.09
LINC00643Q86TS7 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC2.01□□□□□ -2.09
LINC00643Q86TS7 OR4K15-201ENST00000305051 1216 ntBASIC2.01□□□□□ -2.09
LINC00643Q86TS7 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC2.01□□□□□ -2.09
LINC00643Q86TS7 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC2.01□□□□□ -2.09
LINC00643Q86TS7 NFIB-202ENST00000380924 840 ntTSL 5 BASIC2.01□□□□□ -2.09
LINC00643Q86TS7 ZSCAN12P1-201ENST00000406489 419 ntBASIC2.01□□□□□ -2.09
LINC00643Q86TS7 MRM2-202ENST00000407040 582 ntTSL 3 BASIC2.01□□□□□ -2.09
LINC00643Q86TS7 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
LINC00643Q86TS7 Z99755.1-201ENST00000414048 380 ntBASIC2.01□□□□□ -2.09
LINC00643Q86TS7 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC2.01□□□□□ -2.09
LINC00643Q86TS7 NPM1P24-201ENST00000428039 894 ntBASIC2.01□□□□□ -2.09
LINC00643Q86TS7 FTH1P16-201ENST00000435241 552 ntBASIC2.01□□□□□ -2.09
LINC00643Q86TS7 RPL23AP19-201ENST00000436229 369 ntBASIC2.01□□□□□ -2.09
LINC00643Q86TS7 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
LINC00643Q86TS7 KF459542.1-201ENST00000450908 553 ntBASIC2.01□□□□□ -2.09
LINC00643Q86TS7 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC2.01□□□□□ -2.09
LINC00643Q86TS7 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC2.01□□□□□ -2.09
LINC00643Q86TS7 RN7SL385P-201ENST00000468873 276 ntBASIC2.01□□□□□ -2.09
LINC00643Q86TS7 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC2.01□□□□□ -2.09
LINC00643Q86TS7 RN7SL297P-201ENST00000483161 293 ntBASIC2.01□□□□□ -2.09
LINC00643Q86TS7 RN7SL629P-201ENST00000489622 285 ntBASIC2.01□□□□□ -2.09
LINC00643Q86TS7 RN7SL810P-201ENST00000493031 276 ntBASIC2.01□□□□□ -2.09
LINC00643Q86TS7 PFN1P8-201ENST00000497012 543 ntBASIC2.01□□□□□ -2.09
LINC00643Q86TS7 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC2.01□□□□□ -2.09
LINC00643Q86TS7 RNU2-45P-201ENST00000516068 187 ntBASIC2.01□□□□□ -2.09
LINC00643Q86TS7 RNA5SP75-201ENST00000516841 111 ntBASIC2.01□□□□□ -2.09
LINC00643Q86TS7 AC116917.1-201ENST00000520558 305 ntBASIC2.01□□□□□ -2.09
LINC00643Q86TS7 OR5G4P-201ENST00000525251 760 ntBASIC2.01□□□□□ -2.09
LINC00643Q86TS7 NPIPA3-203ENST00000552140 1053 ntTSL 5 BASIC2.01□□□□□ -2.09
LINC00643Q86TS7 NPIPA2-203ENST00000553201 1053 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
LINC00643Q86TS7 EDDM3DP-201ENST00000554692 434 ntBASIC2.01□□□□□ -2.09
LINC00643Q86TS7 AP000842.3-201ENST00000564354 808 ntTSL 3 BASIC2.01□□□□□ -2.09
LINC00643Q86TS7 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC2.01□□□□□ -2.09
LINC00643Q86TS7 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC2.01□□□□□ -2.09
LINC00643Q86TS7 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC2.01□□□□□ -2.09
LINC00643Q86TS7 AL356575.1-201ENST00000603008 283 ntBASIC2.01□□□□□ -2.09
LINC00643Q86TS7 AC009163.6-201ENST00000612367 342 ntBASIC2.01□□□□□ -2.09
LINC00643Q86TS7 AC010297.1-201ENST00000623948 149 ntBASIC2.01□□□□□ -2.09
LINC00643Q86TS7 AP003497.2-201ENST00000624220 967 ntBASIC2.01□□□□□ -2.09
LINC00643Q86TS7 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC2.01□□□□□ -2.09
LINC00643Q86TS7 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC2.01□□□□□ -2.09
LINC00643Q86TS7 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC2.01□□□□□ -2.09
LINC00643Q86TS7 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
LINC00643Q86TS7 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC2.01□□□□□ -2.09
LINC00643Q86TS7 AL161431.1-201ENST00000618966 4205 ntBASIC2□□□□□ -2.09
LINC00643Q86TS7 MAPK10-322ENST00000641485 4530 ntBASIC2□□□□□ -2.09
LINC00643Q86TS7 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC2□□□□□ -2.09
LINC00643Q86TS7 SDAD1P1-202ENST00000524156 2051 ntBASIC2□□□□□ -2.09
LINC00643Q86TS7 AC090337.1-201ENST00000579651 2074 ntBASIC2□□□□□ -2.09
LINC00643Q86TS7 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC2□□□□□ -2.09
LINC00643Q86TS7 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC2□□□□□ -2.09
LINC00643Q86TS7 ASNSP3-201ENST00000451989 1306 ntBASIC2□□□□□ -2.09
LINC00643Q86TS7 AL136520.1-201ENST00000600311 1322 ntBASIC2□□□□□ -2.09
LINC00643Q86TS7 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC2□□□□□ -2.09
LINC00643Q86TS7 RNA5SP393-201ENST00000363423 117 ntBASIC2□□□□□ -2.09
LINC00643Q86TS7 SNORD113.2-201ENST00000364166 89 ntBASIC2□□□□□ -2.09
LINC00643Q86TS7 RN7SKP275-201ENST00000364626 301 ntBASIC2□□□□□ -2.09
LINC00643Q86TS7 RNA5SP284-201ENST00000384547 118 ntBASIC2□□□□□ -2.09
LINC00643Q86TS7 MIR153-1-201ENST00000384914 90 ntBASIC2□□□□□ -2.09
LINC00643Q86TS7 MIR592-201ENST00000384959 97 ntBASIC2□□□□□ -2.09
LINC00643Q86TS7 CCNB2P1-201ENST00000399411 1150 ntBASIC2□□□□□ -2.09
LINC00643Q86TS7 TPT1P2-201ENST00000413105 503 ntBASIC2□□□□□ -2.09
LINC00643Q86TS7 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC2□□□□□ -2.09
LINC00643Q86TS7 AC093084.1-201ENST00000424233 687 ntBASIC2□□□□□ -2.09
LINC00643Q86TS7 AC097713.2-201ENST00000430199 356 ntBASIC2□□□□□ -2.09
LINC00643Q86TS7 MTCO3P21-201ENST00000430791 643 ntBASIC2□□□□□ -2.09
LINC00643Q86TS7 AL354893.1-201ENST00000433735 348 ntBASIC2□□□□□ -2.09
LINC00643Q86TS7 AL353898.1-201ENST00000444055 238 ntBASIC2□□□□□ -2.09
LINC00643Q86TS7 Z96811.1-201ENST00000445880 108 ntBASIC2□□□□□ -2.09
LINC00643Q86TS7 HMGN1P36-201ENST00000446623 298 ntBASIC2□□□□□ -2.09
LINC00643Q86TS7 AC009963.2-201ENST00000453431 138 ntBASIC2□□□□□ -2.09
LINC00643Q86TS7 OR7L1P-201ENST00000456181 380 ntBASIC2□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms