Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 SEC63P1-201ENST00000425785 1258 ntBASIC3.28□□□□□ -1.88
FOXA1P55317 FAR1P1-201ENST00000427163 934 ntBASIC3.28□□□□□ -1.88
FOXA1P55317 HMGB3P5-201ENST00000428894 612 ntBASIC3.28□□□□□ -1.88
FOXA1P55317 RPL12P46-201ENST00000436610 195 ntBASIC3.28□□□□□ -1.88
FOXA1P55317 AC073387.1-201ENST00000453261 709 ntBASIC3.28□□□□□ -1.88
FOXA1P55317 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC3.28□□□□□ -1.88
FOXA1P55317 SNORD105B-201ENST00000458770 79 ntBASIC3.28□□□□□ -1.88
FOXA1P55317 AC091153.1-201ENST00000466297 402 ntBASIC3.28□□□□□ -1.88
FOXA1P55317 RPL23AP14-201ENST00000468281 468 ntBASIC3.28□□□□□ -1.88
FOXA1P55317 AC025518.1-201ENST00000479856 347 ntBASIC3.28□□□□□ -1.88
FOXA1P55317 ACTR3P3-201ENST00000480448 893 ntBASIC3.28□□□□□ -1.88
FOXA1P55317 METTL15P1-201ENST00000481421 1045 ntBASIC3.28□□□□□ -1.88
FOXA1P55317 AC005726.1-201ENST00000494679 427 ntBASIC3.28□□□□□ -1.88
FOXA1P55317 USP9YP5-201ENST00000511770 630 ntBASIC3.28□□□□□ -1.88
FOXA1P55317 HMGB1P23-201ENST00000518743 568 ntBASIC3.28□□□□□ -1.88
FOXA1P55317 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.28□□□□□ -1.88
FOXA1P55317 AC104027.1-201ENST00000521887 300 ntBASIC3.28□□□□□ -1.88
FOXA1P55317 AL109741.3-201ENST00000561748 592 ntBASIC3.28□□□□□ -1.88
FOXA1P55317 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC3.28□□□□□ -1.88
FOXA1P55317 AC034105.4-201ENST00000568304 277 ntBASIC3.28□□□□□ -1.88
FOXA1P55317 FAM106CP-201ENST00000582212 507 ntBASIC3.28□□□□□ -1.88
FOXA1P55317 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC3.28□□□□□ -1.88
FOXA1P55317 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC3.28□□□□□ -1.88
FOXA1P55317 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.28□□□□□ -1.88
FOXA1P55317 AC127502.3-201ENST00000636170 1206 ntBASIC3.28□□□□□ -1.88
FOXA1P55317 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
FOXA1P55317 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
FOXA1P55317 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC3.28□□□□□ -1.88
FOXA1P55317 AC007529.1-201ENST00000418574 2178 ntBASIC3.28□□□□□ -1.88
FOXA1P55317 TMEM161BP1-201ENST00000457388 1457 ntBASIC3.28□□□□□ -1.88
FOXA1P55317 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.89
FOXA1P55317 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.28□□□□□ -1.89
FOXA1P55317 AC004972.1-201ENST00000623934 2209 ntBASIC3.27□□□□□ -1.89
FOXA1P55317 AL122126.1-201ENST00000546905 1318 ntBASIC3.27□□□□□ -1.89
FOXA1P55317 AP001486.2-201ENST00000561652 5113 ntBASIC3.27□□□□□ -1.89
FOXA1P55317 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.27□□□□□ -1.89
FOXA1P55317 SNORD17-201ENST00000390930 237 ntBASIC3.27□□□□□ -1.89
FOXA1P55317 RNA5SP105-201ENST00000391123 113 ntBASIC3.27□□□□□ -1.89
FOXA1P55317 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC3.27□□□□□ -1.89
FOXA1P55317 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.27□□□□□ -1.89
FOXA1P55317 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.27□□□□□ -1.89
FOXA1P55317 SYF2P2-201ENST00000417620 583 ntBASIC3.27□□□□□ -1.89
FOXA1P55317 RPL36AP36-201ENST00000418616 301 ntBASIC3.27□□□□□ -1.89
FOXA1P55317 GTF2IP23-201ENST00000423746 351 ntBASIC3.27□□□□□ -1.89
FOXA1P55317 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC3.27□□□□□ -1.89
FOXA1P55317 AC017083.1-201ENST00000428093 483 ntBASIC3.27□□□□□ -1.89
FOXA1P55317 ETF1P3-201ENST00000430422 1160 ntBASIC3.27□□□□□ -1.89
FOXA1P55317 HMGB3P11-201ENST00000440127 604 ntBASIC3.27□□□□□ -1.89
FOXA1P55317 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.27□□□□□ -1.89
FOXA1P55317 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
FOXA1P55317 AC044797.1-201ENST00000445744 679 ntBASIC3.27□□□□□ -1.89
FOXA1P55317 OR7L1P-201ENST00000456181 380 ntBASIC3.27□□□□□ -1.89
FOXA1P55317 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC3.27□□□□□ -1.89
FOXA1P55317 RPL23AP67-201ENST00000465341 474 ntBASIC3.27□□□□□ -1.89
FOXA1P55317 AC091959.2-201ENST00000477363 321 ntBASIC3.27□□□□□ -1.89
FOXA1P55317 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC3.27□□□□□ -1.89
FOXA1P55317 RN7SKP18-201ENST00000516005 275 ntBASIC3.27□□□□□ -1.89
FOXA1P55317 RNU1-95P-201ENST00000516357 160 ntBASIC3.27□□□□□ -1.89
FOXA1P55317 RNU1-128P-201ENST00000516704 160 ntBASIC3.27□□□□□ -1.89
FOXA1P55317 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
FOXA1P55317 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC3.27□□□□□ -1.89
FOXA1P55317 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC3.27□□□□□ -1.89
FOXA1P55317 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC3.27□□□□□ -1.89
FOXA1P55317 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC3.27□□□□□ -1.89
FOXA1P55317 AL392048.1-201ENST00000613946 534 ntBASIC3.27□□□□□ -1.89
FOXA1P55317 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
FOXA1P55317 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.27□□□□□ -1.89
FOXA1P55317 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
FOXA1P55317 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
FOXA1P55317 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
FOXA1P55317 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
FOXA1P55317 POMP-202ENST00000460403 1428 ntTSL 3 BASIC3.27□□□□□ -1.89
FOXA1P55317 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
FOXA1P55317 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC3.26□□□□□ -1.89
FOXA1P55317 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
FOXA1P55317 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
FOXA1P55317 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
FOXA1P55317 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
FOXA1P55317 AC093719.1-202ENST00000392735 373 ntBASIC3.26□□□□□ -1.89
FOXA1P55317 AL445189.1-201ENST00000405722 338 ntBASIC3.26□□□□□ -1.89
FOXA1P55317 RNA5SP107-201ENST00000411358 122 ntBASIC3.26□□□□□ -1.89
FOXA1P55317 CYCSP19-201ENST00000411715 316 ntBASIC3.26□□□□□ -1.89
FOXA1P55317 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
FOXA1P55317 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC3.26□□□□□ -1.89
FOXA1P55317 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC3.26□□□□□ -1.89
FOXA1P55317 RPL7P53-201ENST00000421245 739 ntBASIC3.26□□□□□ -1.89
FOXA1P55317 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
FOXA1P55317 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC3.26□□□□□ -1.89
FOXA1P55317 RNU7-170P-201ENST00000459303 61 ntBASIC3.26□□□□□ -1.89
FOXA1P55317 AC010468.1-201ENST00000461022 817 ntBASIC3.26□□□□□ -1.89
FOXA1P55317 HMGB1P21-201ENST00000502313 581 ntBASIC3.26□□□□□ -1.89
FOXA1P55317 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.26□□□□□ -1.89
FOXA1P55317 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC3.26□□□□□ -1.89
FOXA1P55317 SCARNA20.6-201ENST00000517251 106 ntBASIC3.26□□□□□ -1.89
FOXA1P55317 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC3.26□□□□□ -1.89
FOXA1P55317 AC103843.2-201ENST00000530523 682 ntBASIC3.26□□□□□ -1.89
FOXA1P55317 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.26□□□□□ -1.89
FOXA1P55317 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.26□□□□□ -1.89
FOXA1P55317 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
FOXA1P55317 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms