Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
MSH6P52701 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC4.83□□□□□ -1.64
MSH6P52701 RNU2-22P-201ENST00000411266 212 ntBASIC4.83□□□□□ -1.64
MSH6P52701 DSCR4-IT1-201ENST00000417138 424 ntTSL 5 BASIC4.83□□□□□ -1.64
MSH6P52701 AC093698.1-201ENST00000423843 571 ntBASIC4.83□□□□□ -1.64
MSH6P52701 SDCBPP2-201ENST00000424643 885 ntBASIC4.83□□□□□ -1.64
MSH6P52701 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC4.83□□□□□ -1.64
MSH6P52701 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC4.83□□□□□ -1.64
MSH6P52701 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC4.83□□□□□ -1.64
MSH6P52701 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC4.83□□□□□ -1.64
MSH6P52701 AC109458.1-201ENST00000508858 316 ntBASIC4.83□□□□□ -1.64
MSH6P52701 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.83□□□□□ -1.64
MSH6P52701 AC087276.1-201ENST00000529659 480 ntBASIC4.83□□□□□ -1.64
MSH6P52701 AC092747.2-201ENST00000545069 983 ntBASIC4.83□□□□□ -1.64
MSH6P52701 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC4.83□□□□□ -1.64
MSH6P52701 AL008729.2-201ENST00000606393 473 ntBASIC4.83□□□□□ -1.64
MSH6P52701 AL354950.1-201ENST00000614150 568 ntBASIC4.83□□□□□ -1.64
MSH6P52701 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC4.83□□□□□ -1.64
MSH6P52701 DLD-214ENST00000639772 421 ntTSL 5 BASIC4.83□□□□□ -1.64
MSH6P52701 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.83□□□□□ -1.64
MSH6P52701 ZNF90P1-201ENST00000480493 1951 ntBASIC4.83□□□□□ -1.64
MSH6P52701 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
MSH6P52701 AC011503.2-201ENST00000594230 1500 ntBASIC4.83□□□□□ -1.64
MSH6P52701 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
MSH6P52701 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
MSH6P52701 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.83□□□□□ -1.64
MSH6P52701 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
MSH6P52701 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
MSH6P52701 AC123912.3-201ENST00000600907 1367 ntBASIC4.82□□□□□ -1.64
MSH6P52701 HSPA8P19-201ENST00000505359 1517 ntBASIC4.82□□□□□ -1.64
MSH6P52701 MIR449A-201ENST00000362113 91 ntBASIC4.82□□□□□ -1.64
MSH6P52701 RPA3-203ENST00000401447 414 ntTSL 3 BASIC4.82□□□□□ -1.64
MSH6P52701 LIPT1P1-201ENST00000415870 1186 ntBASIC4.82□□□□□ -1.64
MSH6P52701 MTND2P11-201ENST00000423638 648 ntBASIC4.82□□□□□ -1.64
MSH6P52701 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC4.82□□□□□ -1.64
MSH6P52701 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC4.82□□□□□ -1.64
MSH6P52701 AC010486.1-201ENST00000511793 424 ntBASIC4.82□□□□□ -1.64
MSH6P52701 SUMO2P20-201ENST00000520803 283 ntBASIC4.82□□□□□ -1.64
MSH6P52701 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC4.82□□□□□ -1.64
MSH6P52701 AL121603.1-201ENST00000553815 142 ntBASIC4.82□□□□□ -1.64
MSH6P52701 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC4.82□□□□□ -1.64
MSH6P52701 HNRNPDLP4-201ENST00000605144 301 ntBASIC4.82□□□□□ -1.64
MSH6P52701 AC015802.5-201ENST00000607478 399 ntBASIC4.82□□□□□ -1.64
MSH6P52701 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC4.82□□□□□ -1.64
MSH6P52701 MIR4727-201ENST00000622232 55 ntBASIC4.82□□□□□ -1.64
MSH6P52701 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC4.82□□□□□ -1.64
MSH6P52701 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
MSH6P52701 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
MSH6P52701 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
MSH6P52701 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
MSH6P52701 IDE-202ENST00000371581 4480 ntTSL 2 BASIC4.81□□□□□ -1.64
MSH6P52701 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
MSH6P52701 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
MSH6P52701 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
MSH6P52701 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC4.81□□□□□ -1.64
MSH6P52701 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
MSH6P52701 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC4.81□□□□□ -1.64
MSH6P52701 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC4.81□□□□□ -1.64
MSH6P52701 AL591623.2-201ENST00000449978 222 ntBASIC4.81□□□□□ -1.64
MSH6P52701 AC098824.1-201ENST00000453565 980 ntBASIC4.81□□□□□ -1.64
MSH6P52701 AC109925.1-201ENST00000478069 331 ntBASIC4.81□□□□□ -1.64
MSH6P52701 AC022080.3-201ENST00000544433 482 ntBASIC4.81□□□□□ -1.64
MSH6P52701 LINC01578-206ENST00000555520 977 ntTSL 3 BASIC4.81□□□□□ -1.64
MSH6P52701 AL157394.1-201ENST00000562983 1224 ntBASIC4.81□□□□□ -1.64
MSH6P52701 OR5AC4P-202ENST00000642086 985 ntBASIC4.81□□□□□ -1.64
MSH6P52701 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
MSH6P52701 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.81□□□□□ -1.64
MSH6P52701 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC4.81□□□□□ -1.64
MSH6P52701 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC4.81□□□□□ -1.64
MSH6P52701 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
MSH6P52701 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.81□□□□□ -1.64
MSH6P52701 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
MSH6P52701 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC4.81□□□□□ -1.64
MSH6P52701 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
MSH6P52701 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC4.81□□□□□ -1.64
MSH6P52701 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC4.81□□□□□ -1.64
MSH6P52701 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC4.81□□□□□ -1.64
MSH6P52701 HLFP1-201ENST00000402375 499 ntBASIC4.8□□□□□ -1.64
MSH6P52701 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC4.8□□□□□ -1.64
MSH6P52701 NDUFB1P1-201ENST00000435191 180 ntBASIC4.8□□□□□ -1.64
MSH6P52701 YWHAQP9-201ENST00000445891 512 ntBASIC4.8□□□□□ -1.64
MSH6P52701 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC4.8□□□□□ -1.64
MSH6P52701 TRBV12-2-201ENST00000489763 344 ntBASIC4.8□□□□□ -1.64
MSH6P52701 HMGB1P21-201ENST00000502313 581 ntBASIC4.8□□□□□ -1.64
MSH6P52701 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC4.8□□□□□ -1.64
MSH6P52701 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC4.8□□□□□ -1.64
MSH6P52701 AC022960.2-201ENST00000616300 666 ntBASIC4.8□□□□□ -1.64
MSH6P52701 AC138932.5-201ENST00000617759 563 ntBASIC4.8□□□□□ -1.64
MSH6P52701 AC074140.1-201ENST00000621617 208 ntBASIC4.8□□□□□ -1.64
MSH6P52701 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
MSH6P52701 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
MSH6P52701 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.8□□□□□ -1.64
MSH6P52701 AC018555.1-201ENST00000567548 1980 ntBASIC4.79□□□□□ -1.64
MSH6P52701 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC4.79□□□□□ -1.64
MSH6P52701 MFSD8-233ENST00000641482 4860 ntBASIC4.79□□□□□ -1.64
MSH6P52701 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.79□□□□□ -1.64
MSH6P52701 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
MSH6P52701 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
MSH6P52701 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
MSH6P52701 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 92.4 ms