Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC4.86□□□□□ -1.63
CIITAP33076 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC4.86□□□□□ -1.63
CIITAP33076 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC4.86□□□□□ -1.63
CIITAP33076 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC4.86□□□□□ -1.63
CIITAP33076 MTCO1P40-201ENST00000574371 625 ntBASIC4.86□□□□□ -1.63
CIITAP33076 AC023575.1-201ENST00000580510 358 ntBASIC4.86□□□□□ -1.63
CIITAP33076 AL161729.3-201ENST00000603533 673 ntBASIC4.86□□□□□ -1.63
CIITAP33076 Z94722.1-201ENST00000604328 474 ntBASIC4.86□□□□□ -1.63
CIITAP33076 AL590392.1-201ENST00000604960 446 ntBASIC4.86□□□□□ -1.63
CIITAP33076 AP000255.1-201ENST00000610276 676 ntBASIC4.86□□□□□ -1.63
CIITAP33076 AC006338.2-201ENST00000616864 791 ntBASIC4.86□□□□□ -1.63
CIITAP33076 AC131238.1-201ENST00000617135 328 ntBASIC4.86□□□□□ -1.63
CIITAP33076 CR392039.4-201ENST00000624968 501 ntBASIC4.86□□□□□ -1.63
CIITAP33076 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC4.86□□□□□ -1.63
CIITAP33076 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.86□□□□□ -1.63
CIITAP33076 AC068137.4-201ENST00000638485 296 ntBASIC4.86□□□□□ -1.63
CIITAP33076 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.86□□□□□ -1.63
CIITAP33076 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.86□□□□□ -1.63
CIITAP33076 POMP-202ENST00000460403 1428 ntTSL 3 BASIC4.86□□□□□ -1.63
CIITAP33076 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CIITAP33076 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.86□□□□□ -1.63
CIITAP33076 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC4.86□□□□□ -1.63
CIITAP33076 RNF6P1-201ENST00000444889 1784 ntBASIC4.86□□□□□ -1.63
CIITAP33076 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CIITAP33076 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
CIITAP33076 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CIITAP33076 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
CIITAP33076 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
CIITAP33076 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
CIITAP33076 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
CIITAP33076 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.85□□□□□ -1.63
CIITAP33076 AC022893.2-201ENST00000564832 3296 ntBASIC4.85□□□□□ -1.63
CIITAP33076 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
CIITAP33076 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CIITAP33076 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
CIITAP33076 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.85□□□□□ -1.63
CIITAP33076 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.85□□□□□ -1.63
CIITAP33076 SNORA40.2-201ENST00000390847 128 ntBASIC4.85□□□□□ -1.63
CIITAP33076 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
CIITAP33076 SFR1P1-201ENST00000403720 688 ntBASIC4.85□□□□□ -1.63
CIITAP33076 RPL31P52-201ENST00000407532 367 ntBASIC4.85□□□□□ -1.63
CIITAP33076 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CIITAP33076 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.85□□□□□ -1.63
CIITAP33076 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC4.85□□□□□ -1.63
CIITAP33076 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CIITAP33076 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC4.85□□□□□ -1.63
CIITAP33076 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC4.85□□□□□ -1.63
CIITAP33076 MTND2P18-201ENST00000419962 1030 ntBASIC4.85□□□□□ -1.63
CIITAP33076 USP9YP11-201ENST00000427537 717 ntBASIC4.85□□□□□ -1.63
CIITAP33076 VN1R108P-201ENST00000431580 830 ntBASIC4.85□□□□□ -1.63
CIITAP33076 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC4.85□□□□□ -1.63
CIITAP33076 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC4.85□□□□□ -1.63
CIITAP33076 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC4.85□□□□□ -1.63
CIITAP33076 RPS26P30-201ENST00000443431 335 ntBASIC4.85□□□□□ -1.63
CIITAP33076 TPT1P12-201ENST00000448968 492 ntBASIC4.85□□□□□ -1.63
CIITAP33076 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC4.85□□□□□ -1.63
CIITAP33076 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC4.85□□□□□ -1.63
CIITAP33076 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC4.85□□□□□ -1.63
CIITAP33076 ART2BP-201ENST00000453501 499 ntBASIC4.85□□□□□ -1.63
CIITAP33076 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.85□□□□□ -1.63
CIITAP33076 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
CIITAP33076 AC022795.1-201ENST00000473808 480 ntBASIC4.85□□□□□ -1.63
CIITAP33076 RN7SL41P-201ENST00000476144 297 ntBASIC4.85□□□□□ -1.63
CIITAP33076 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC4.85□□□□□ -1.63
CIITAP33076 AL161747.1-201ENST00000480068 358 ntBASIC4.85□□□□□ -1.63
CIITAP33076 UBA52P3-201ENST00000491303 382 ntBASIC4.85□□□□□ -1.63
CIITAP33076 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC4.85□□□□□ -1.63
CIITAP33076 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC4.85□□□□□ -1.63
CIITAP33076 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC4.85□□□□□ -1.63
CIITAP33076 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC4.85□□□□□ -1.63
CIITAP33076 RNA5SP519-201ENST00000516480 119 ntBASIC4.85□□□□□ -1.63
CIITAP33076 AF186190.1-201ENST00000517470 480 ntBASIC4.85□□□□□ -1.63
CIITAP33076 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC4.85□□□□□ -1.63
CIITAP33076 MIR3939-201ENST00000582614 106 ntBASIC4.85□□□□□ -1.63
CIITAP33076 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC4.85□□□□□ -1.63
CIITAP33076 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC4.85□□□□□ -1.63
CIITAP33076 AL022161.1-201ENST00000604390 213 ntBASIC4.85□□□□□ -1.63
CIITAP33076 AL138721.1-201ENST00000616756 179 ntBASIC4.85□□□□□ -1.63
CIITAP33076 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC4.85□□□□□ -1.63
CIITAP33076 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
CIITAP33076 OR1S1-201ENST00000624470 978 ntBASIC4.85□□□□□ -1.63
CIITAP33076 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC4.85□□□□□ -1.63
CIITAP33076 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CIITAP33076 MTND5P31-201ENST00000419366 1374 ntBASIC4.85□□□□□ -1.63
CIITAP33076 AC073055.1-201ENST00000456901 1621 ntBASIC4.85□□□□□ -1.63
CIITAP33076 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
CIITAP33076 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.85□□□□□ -1.63
CIITAP33076 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CIITAP33076 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC4.85□□□□□ -1.63
CIITAP33076 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
CIITAP33076 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC4.84□□□□□ -1.63
CIITAP33076 AL133243.3-201ENST00000617415 3004 ntBASIC4.84□□□□□ -1.63
CIITAP33076 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.84□□□□□ -1.63
CIITAP33076 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
CIITAP33076 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
CIITAP33076 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.84□□□□□ -1.63
CIITAP33076 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CIITAP33076 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CIITAP33076 Y_RNA.169-201ENST00000363745 96 ntBASIC4.84□□□□□ -1.63
CIITAP33076 RNA5SP28-201ENST00000363841 119 ntBASIC4.84□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms