Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 MIR124-3-201ENST00000384866 87 ntBASIC3.96□□□□□ -1.78
SDC3O75056 HMGB3P31-201ENST00000413333 595 ntBASIC3.96□□□□□ -1.78
SDC3O75056 MAP1LC3BP1-201ENST00000417653 379 ntBASIC3.96□□□□□ -1.78
SDC3O75056 AC114814.2-201ENST00000419195 485 ntBASIC3.96□□□□□ -1.78
SDC3O75056 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC3.96□□□□□ -1.78
SDC3O75056 AL358472.1-201ENST00000431295 329 ntBASIC3.96□□□□□ -1.78
SDC3O75056 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC3.96□□□□□ -1.78
SDC3O75056 RPL37P1-201ENST00000432310 284 ntBASIC3.96□□□□□ -1.78
SDC3O75056 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC3.96□□□□□ -1.78
SDC3O75056 ZNF736P6Y-201ENST00000447526 1213 ntBASIC3.96□□□□□ -1.78
SDC3O75056 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
SDC3O75056 SETP6-201ENST00000479329 568 ntBASIC3.96□□□□□ -1.78
SDC3O75056 ACTR3P3-201ENST00000480448 893 ntBASIC3.96□□□□□ -1.78
SDC3O75056 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC3.96□□□□□ -1.78
SDC3O75056 BNIP3P41-201ENST00000503774 571 ntBASIC3.96□□□□□ -1.78
SDC3O75056 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.96□□□□□ -1.78
SDC3O75056 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC3.96□□□□□ -1.78
SDC3O75056 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC3.96□□□□□ -1.78
SDC3O75056 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC3.96□□□□□ -1.78
SDC3O75056 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC3.96□□□□□ -1.78
SDC3O75056 CR383656.14-201ENST00000551951 406 ntBASIC3.96□□□□□ -1.78
SDC3O75056 AC063950.1-201ENST00000552036 308 ntBASIC3.96□□□□□ -1.78
SDC3O75056 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC3.96□□□□□ -1.78
SDC3O75056 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC3.96□□□□□ -1.78
SDC3O75056 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC3.96□□□□□ -1.78
SDC3O75056 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC3.96□□□□□ -1.78
SDC3O75056 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
SDC3O75056 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC3.96□□□□□ -1.78
SDC3O75056 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC3.96□□□□□ -1.78
SDC3O75056 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
SDC3O75056 AC015726.1-201ENST00000602353 681 ntBASIC3.96□□□□□ -1.78
SDC3O75056 NTAN1P1-201ENST00000603150 646 ntBASIC3.96□□□□□ -1.78
SDC3O75056 AC005776.1-201ENST00000603164 290 ntBASIC3.96□□□□□ -1.78
SDC3O75056 AC115621.1-201ENST00000604653 858 ntBASIC3.96□□□□□ -1.78
SDC3O75056 MKKS-203ENST00000609375 882 ntTSL 2 BASIC3.96□□□□□ -1.78
SDC3O75056 AC084824.5-201ENST00000612009 413 ntBASIC3.96□□□□□ -1.78
SDC3O75056 FP236240.3-201ENST00000623061 327 ntBASIC3.96□□□□□ -1.78
SDC3O75056 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
SDC3O75056 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC3.96□□□□□ -1.78
SDC3O75056 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
SDC3O75056 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
SDC3O75056 AC138393.1-206ENST00000540997 1886 ntBASIC3.96□□□□□ -1.78
SDC3O75056 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
SDC3O75056 PNPT1P2-201ENST00000456768 2050 ntBASIC3.96□□□□□ -1.78
SDC3O75056 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
SDC3O75056 ERCC6-202ENST00000374127 1782 ntBASIC3.95□□□□□ -1.78
SDC3O75056 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC3.95□□□□□ -1.78
SDC3O75056 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC3.95□□□□□ -1.78
SDC3O75056 OR4A15-201ENST00000314706 1035 ntBASIC3.95□□□□□ -1.78
SDC3O75056 MIR208A-201ENST00000362287 71 ntBASIC3.95□□□□□ -1.78
SDC3O75056 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC3.95□□□□□ -1.78
SDC3O75056 RNU6-213P-201ENST00000384051 104 ntBASIC3.95□□□□□ -1.78
SDC3O75056 MIR3074-201ENST00000384885 81 ntBASIC3.95□□□□□ -1.78
SDC3O75056 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.95□□□□□ -1.78
SDC3O75056 AC073310.1-201ENST00000423226 1033 ntBASIC3.95□□□□□ -1.78
SDC3O75056 UBE2D3P3-201ENST00000426992 425 ntBASIC3.95□□□□□ -1.78
SDC3O75056 NPM1P34-201ENST00000428821 893 ntBASIC3.95□□□□□ -1.78
SDC3O75056 YME1L1P1-201ENST00000429435 297 ntBASIC3.95□□□□□ -1.78
SDC3O75056 ETF1P3-201ENST00000430422 1160 ntBASIC3.95□□□□□ -1.78
SDC3O75056 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC3.95□□□□□ -1.78
SDC3O75056 PPIAP15-201ENST00000479662 484 ntBASIC3.95□□□□□ -1.78
SDC3O75056 RFESD-208ENST00000513950 464 ntTSL 5 BASIC3.95□□□□□ -1.78
SDC3O75056 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC3.95□□□□□ -1.78
SDC3O75056 RNU6-352P-201ENST00000516908 107 ntBASIC3.95□□□□□ -1.78
SDC3O75056 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC3.95□□□□□ -1.78
SDC3O75056 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC3.95□□□□□ -1.78
SDC3O75056 AP001180.3-201ENST00000582221 145 ntBASIC3.95□□□□□ -1.78
SDC3O75056 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC3.95□□□□□ -1.78
SDC3O75056 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC3.95□□□□□ -1.78
SDC3O75056 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC3.95□□□□□ -1.78
SDC3O75056 AC114878.2-201ENST00000604863 1251 ntBASIC3.95□□□□□ -1.78
SDC3O75056 MIR8084-201ENST00000614105 89 ntBASIC3.95□□□□□ -1.78
SDC3O75056 AC004825.2-201ENST00000616634 455 ntBASIC3.95□□□□□ -1.78
SDC3O75056 AK6-205ENST00000618980 483 ntTSL 2 BASIC3.95□□□□□ -1.78
SDC3O75056 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC3.95□□□□□ -1.78
SDC3O75056 AC095038.2-201ENST00000621464 1070 ntBASIC3.95□□□□□ -1.78
SDC3O75056 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC3.95□□□□□ -1.78
SDC3O75056 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
SDC3O75056 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
SDC3O75056 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC3.95□□□□□ -1.78
SDC3O75056 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.95□□□□□ -1.78
SDC3O75056 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
SDC3O75056 AL136964.1-201ENST00000622038 2990 ntBASIC3.95□□□□□ -1.78
SDC3O75056 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC3.95□□□□□ -1.78
SDC3O75056 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
SDC3O75056 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
SDC3O75056 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC3.95□□□□□ -1.78
SDC3O75056 MTCO1P18-201ENST00000455518 1419 ntBASIC3.95□□□□□ -1.78
SDC3O75056 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.94□□□□□ -1.78
SDC3O75056 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
SDC3O75056 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.94□□□□□ -1.78
SDC3O75056 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
SDC3O75056 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
SDC3O75056 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
SDC3O75056 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
SDC3O75056 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
SDC3O75056 AC067945.1-201ENST00000342609 618 ntBASIC3.94□□□□□ -1.78
SDC3O75056 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC3.94□□□□□ -1.78
SDC3O75056 SNORD56.4-201ENST00000363883 71 ntBASIC3.94□□□□□ -1.78
SDC3O75056 RN7SKP156-201ENST00000410308 342 ntBASIC3.94□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 92.1 ms