Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AL663061.1-201ENST00000416625 580 ntBASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 AC009229.2-201ENST00000417213 351 ntTSL 3 BASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 AL359382.1-201ENST00000417838 426 ntTSL 5 BASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 AC069213.2-201ENST00000420238 366 ntBASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 AC005019.1-201ENST00000436455 431 ntBASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 H2AFZP6-201ENST00000444403 394 ntBASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 AC016696.1-201ENST00000446949 318 ntBASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 CECR9-201ENST00000453421 199 ntBASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 MTCO3P10-201ENST00000455912 772 ntBASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 AC068228.1-201ENST00000461723 211 ntBASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 AC026254.2-201ENST00000475295 371 ntBASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 RN7SL809P-201ENST00000482040 297 ntBASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 AC095057.1-201ENST00000507583 168 ntBASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 RNA5SP418-201ENST00000515951 117 ntBASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 EEF1B2P2-201ENST00000519625 676 ntBASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 AP002404.1-201ENST00000532005 451 ntBASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 AC011120.1-201ENST00000583916 624 ntTSL 5 BASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 MIR3672-201ENST00000584290 82 ntBASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 AC004805.3-201ENST00000603178 310 ntBASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 AC092747.3-201ENST00000603769 301 ntBASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 AC020765.1-201ENST00000604296 328 ntBASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 AC104662.1-201ENST00000604448 511 ntBASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 AC025034.2-201ENST00000623264 286 ntBASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 DRG1-207ENST00000629688 309 ntTSL 5 BASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 C2orf16-201ENST00000408964 6200 ntAPPRIS P2 BASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 OR5T2-202ENST00000641661 2062 ntAPPRIS ALT2 BASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 RRS1-AS1-201ENST00000499642 4366 ntTSL 2 BASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 SULF1-201ENST00000260128 5710 ntAPPRIS P1 TSL 5 BASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 LCP2-201ENST00000046794 4678 ntAPPRIS P2 TSL 1 (best) BASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 GOLGA6L22-204ENST00000622895 4178 ntAPPRIS P5 TSL 5 BASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC6.86□□□□□ -1.31
LIMD1Q9UGP4 AC007406.5-201ENST00000570140 3170 ntBASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 AKAP17BP-201ENST00000431706 2719 ntBASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 SCP2-212ENST00000488965 3926 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 LYSMD3-201ENST00000315948 4259 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 PEX13-201ENST00000295030 4470 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 NXF2B-203ENST00000604395 2143 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 NXF2-201ENST00000604790 2143 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 ZNF559-ZNF177-203ENST00000541595 2435 ntAPPRIS P3 TSL 2 BASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 LACRT-201ENST00000257867 551 ntAPPRIS P2 TSL 1 (best) BASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 OR2M4-201ENST00000306687 936 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 RNU6-1252P-201ENST00000363054 104 ntBASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 Y_RNA.176-201ENST00000363815 109 ntBASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 Y_RNA.476-201ENST00000384347 108 ntBASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 RPL9P21-201ENST00000392269 505 ntBASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 MCFD2P1-201ENST00000417812 300 ntBASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 RPS3P2-201ENST00000421346 701 ntBASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 AC018865.2-201ENST00000423631 129 ntBASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 SKA2P1-201ENST00000425592 390 ntBASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 EZH2P1-201ENST00000431167 291 ntBASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 PNKDP1-201ENST00000435914 430 ntBASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 AL031584.1-201ENST00000447169 754 ntBASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 AL035420.1-202ENST00000450129 357 ntTSL 3 BASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 AC015911.1-201ENST00000495111 156 ntBASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 AC002456.2-201ENST00000509356 380 ntBASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 RNU4ATAC10P-201ENST00000516967 122 ntBASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 LECT2-205ENST00000522943 574 ntTSL 3 BASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 TRIM77BP-201ENST00000524985 1119 ntBASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 AC022075.2-201ENST00000535911 562 ntTSL 4 BASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 AC138761.3-201ENST00000579993 334 ntBASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 AC112491.1-201ENST00000602890 248 ntTSL 5 BASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 LAPTM4BP2-201ENST00000604542 446 ntBASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 AC109309.2-201ENST00000612597 332 ntBASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 MIR6811-201ENST00000620409 58 ntBASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 AL357559.1-201ENST00000622228 274 ntBASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 BDP1P-201ENST00000582658 1990 ntBASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 CLTC-210ENST00000579456 2301 ntTSL 5 BASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 OR7C1-205ENST00000642030 11778 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 INTS12-202ENST00000394735 1927 ntTSL 5 BASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 UIMC1-207ENST00000506128 1945 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 ZNF507-203ENST00000544431 5764 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 TRG-AS1-201ENST00000629357 3645 ntTSL 2 BASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 C5orf34-201ENST00000306862 2507 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 RACGAP1-203ENST00000454520 3080 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 NLRP3P1-201ENST00000622303 1785 ntBASIC6.85□□□□□ -1.31
LIMD1Q9UGP4 MYO3B-203ENST00000409044 5448 ntAPPRIS ALT2 TSL 1 (best) BASIC6.84□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 79.8 ms