Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 AC022695.1-201ENST00000522089 237 ntBASIC3.97□□□□□ -1.77
CCDC112Q8NEF3 AC025423.2-201ENST00000537570 439 ntBASIC3.97□□□□□ -1.77
CCDC112Q8NEF3 AC037471.2-201ENST00000564941 598 ntBASIC3.97□□□□□ -1.77
CCDC112Q8NEF3 MIR4716-201ENST00000579628 84 ntBASIC3.97□□□□□ -1.77
CCDC112Q8NEF3 MIR4429-201ENST00000580105 73 ntBASIC3.97□□□□□ -1.77
CCDC112Q8NEF3 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC112Q8NEF3 AC006133.1-201ENST00000617106 264 ntBASIC3.97□□□□□ -1.77
CCDC112Q8NEF3 AC110801.1-201ENST00000623590 212 ntBASIC3.97□□□□□ -1.77
CCDC112Q8NEF3 AC009452.1-201ENST00000640823 606 ntBASIC3.97□□□□□ -1.77
CCDC112Q8NEF3 AP000553.6-201ENST00000641242 118 ntBASIC3.97□□□□□ -1.77
CCDC112Q8NEF3 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC112Q8NEF3 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC112Q8NEF3 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC112Q8NEF3 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.97□□□□□ -1.77
CCDC112Q8NEF3 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
CCDC112Q8NEF3 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC3.97□□□□□ -1.77
CCDC112Q8NEF3 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC3.97□□□□□ -1.77
CCDC112Q8NEF3 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC112Q8NEF3 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC112Q8NEF3 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC112Q8NEF3 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.77
CCDC112Q8NEF3 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.77
CCDC112Q8NEF3 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC3.96□□□□□ -1.77
CCDC112Q8NEF3 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 MIR200C-201ENST00000384980 68 ntBASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 RNU6-328P-201ENST00000390887 106 ntBASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 U3.39-201ENST00000408569 239 ntBASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 RNA5SP293-201ENST00000410527 113 ntBASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 RNA5SP107-201ENST00000411358 122 ntBASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 AC073464.3-201ENST00000422564 712 ntBASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 AL049610.1-201ENST00000423374 372 ntBASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 USP9YP7-201ENST00000436723 430 ntBASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 RPS29P7-201ENST00000439662 171 ntBASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 RRM2P4-201ENST00000441721 562 ntBASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 USP9YP32-201ENST00000452432 430 ntBASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 AC069277.2-201ENST00000454211 432 ntBASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 OR9M1P-201ENST00000459641 921 ntBASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 RN7SL542P-201ENST00000467147 294 ntBASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 RN7SL330P-201ENST00000469709 307 ntBASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 AC084357.1-201ENST00000473404 255 ntBASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 NDUFB4P9-201ENST00000511646 388 ntBASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 FABP5P12-201ENST00000515543 389 ntBASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 SMARCE1P4-201ENST00000523647 241 ntBASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 AC004024.1-201ENST00000549244 247 ntBASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 AC120057.2-201ENST00000571520 271 ntBASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 AL592436.1-201ENST00000605135 558 ntBASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 AC099669.2-201ENST00000616549 437 ntBASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 MIR6500-201ENST00000622700 86 ntBASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC112Q8NEF3 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.95□□□□□ -1.78
CCDC112Q8NEF3 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.95□□□□□ -1.78
CCDC112Q8NEF3 OTUD4P1-201ENST00000237841 3067 ntBASIC3.95□□□□□ -1.78
CCDC112Q8NEF3 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC112Q8NEF3 U1.1-201ENST00000384101 164 ntBASIC3.95□□□□□ -1.78
CCDC112Q8NEF3 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.95□□□□□ -1.78
CCDC112Q8NEF3 AC017079.2-201ENST00000416102 485 ntBASIC3.95□□□□□ -1.78
CCDC112Q8NEF3 AC068533.1-201ENST00000418542 415 ntBASIC3.95□□□□□ -1.78
CCDC112Q8NEF3 AC093084.1-201ENST00000424233 687 ntBASIC3.95□□□□□ -1.78
CCDC112Q8NEF3 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.95□□□□□ -1.78
CCDC112Q8NEF3 AL451062.2-201ENST00000427515 271 ntBASIC3.95□□□□□ -1.78
CCDC112Q8NEF3 ARF4P2-201ENST00000430209 526 ntBASIC3.95□□□□□ -1.78
CCDC112Q8NEF3 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC3.95□□□□□ -1.78
CCDC112Q8NEF3 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC112Q8NEF3 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.95□□□□□ -1.78
CCDC112Q8NEF3 AC021205.2-201ENST00000480069 347 ntBASIC3.95□□□□□ -1.78
CCDC112Q8NEF3 IGKV2-23-201ENST00000518729 323 ntBASIC3.95□□□□□ -1.78
CCDC112Q8NEF3 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC3.95□□□□□ -1.78
CCDC112Q8NEF3 MIR5685-201ENST00000579080 79 ntBASIC3.95□□□□□ -1.78
CCDC112Q8NEF3 MIR3158-1-201ENST00000583596 81 ntBASIC3.95□□□□□ -1.78
CCDC112Q8NEF3 VN1R84P-201ENST00000593697 235 ntBASIC3.95□□□□□ -1.78
CCDC112Q8NEF3 AC008739.3-201ENST00000603262 127 ntBASIC3.95□□□□□ -1.78
CCDC112Q8NEF3 AC009948.4-201ENST00000604692 675 ntBASIC3.95□□□□□ -1.78
CCDC112Q8NEF3 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC3.95□□□□□ -1.78
CCDC112Q8NEF3 AC103710.3-201ENST00000608157 948 ntBASIC3.95□□□□□ -1.78
CCDC112Q8NEF3 AC009318.3-201ENST00000616916 503 ntBASIC3.95□□□□□ -1.78
CCDC112Q8NEF3 AL713922.2-201ENST00000619384 716 ntBASIC3.95□□□□□ -1.78
CCDC112Q8NEF3 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.95□□□□□ -1.78
CCDC112Q8NEF3 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.95□□□□□ -1.78
CCDC112Q8NEF3 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.95□□□□□ -1.78
CCDC112Q8NEF3 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC112Q8NEF3 CD36-221ENST00000534394 1741 ntTSL 2 BASIC3.95□□□□□ -1.78
CCDC112Q8NEF3 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC112Q8NEF3 AC110792.3-201ENST00000595906 1614 ntBASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 90.5 ms