Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 RPL23AP1-201ENST00000428990 471 ntBASIC3.95□□□□□ -1.78
ZNF540Q8NDQ6 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC3.95□□□□□ -1.78
ZNF540Q8NDQ6 RPL23AP93-201ENST00000440847 484 ntBASIC3.95□□□□□ -1.78
ZNF540Q8NDQ6 DNAJC19P8-201ENST00000452887 259 ntBASIC3.95□□□□□ -1.78
ZNF540Q8NDQ6 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC3.95□□□□□ -1.78
ZNF540Q8NDQ6 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.95□□□□□ -1.78
ZNF540Q8NDQ6 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC3.95□□□□□ -1.78
ZNF540Q8NDQ6 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC3.95□□□□□ -1.78
ZNF540Q8NDQ6 AC026616.1-201ENST00000523157 525 ntBASIC3.95□□□□□ -1.78
ZNF540Q8NDQ6 EIF5A2P1-201ENST00000564027 460 ntBASIC3.95□□□□□ -1.78
ZNF540Q8NDQ6 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
ZNF540Q8NDQ6 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
ZNF540Q8NDQ6 KATNBL1P5-201ENST00000605015 517 ntBASIC3.95□□□□□ -1.78
ZNF540Q8NDQ6 AL133243.1-201ENST00000614487 366 ntBASIC3.95□□□□□ -1.78
ZNF540Q8NDQ6 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC3.95□□□□□ -1.78
ZNF540Q8NDQ6 AC092184.1-201ENST00000625042 715 ntBASIC3.95□□□□□ -1.78
ZNF540Q8NDQ6 LINC01808-202ENST00000641680 1116 ntBASIC3.95□□□□□ -1.78
ZNF540Q8NDQ6 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
ZNF540Q8NDQ6 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
ZNF540Q8NDQ6 RAD17P1-201ENST00000418130 2042 ntBASIC3.95□□□□□ -1.78
ZNF540Q8NDQ6 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC3.95□□□□□ -1.78
ZNF540Q8NDQ6 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
ZNF540Q8NDQ6 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
ZNF540Q8NDQ6 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 RPL32P3-201ENST00000359025 275 ntBASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 RN7SKP227-201ENST00000364445 330 ntBASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 AP000567.1-201ENST00000406413 156 ntBASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 ELOCP19-201ENST00000411919 318 ntBASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 MTND4P22-201ENST00000413116 1169 ntBASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 AC008280.1-201ENST00000418851 412 ntBASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 AL513174.1-201ENST00000423182 629 ntBASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 COX6CP15-201ENST00000426313 211 ntBASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 VDAC1P6-201ENST00000430062 855 ntBASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 VDAC1P3-201ENST00000434069 851 ntBASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 SETP5-201ENST00000437270 562 ntBASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 HMGB1P16-201ENST00000447155 540 ntBASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 AL034418.1-201ENST00000448675 860 ntBASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 HMGN3P1-201ENST00000453847 193 ntBASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 FTH1P2-201ENST00000466086 412 ntBASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 MTCO3P35-201ENST00000485582 781 ntBASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 AC005798.1-201ENST00000513715 387 ntBASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 AP004371.1-201ENST00000525240 214 ntBASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 AC107954.1-201ENST00000565906 727 ntBASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 AL360157.1-201ENST00000565962 87 ntBASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 AC095057.3-201ENST00000567102 1157 ntBASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 AC022069.1-201ENST00000582910 658 ntBASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 AC020914.4-201ENST00000597690 277 ntBASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 AC112503.2-201ENST00000609005 552 ntBASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 ZNF734P-201ENST00000419494 1534 ntBASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 AL355578.1-201ENST00000607405 1328 ntBASIC3.94□□□□□ -1.78
ZNF540Q8NDQ6 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
ZNF540Q8NDQ6 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
ZNF540Q8NDQ6 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
ZNF540Q8NDQ6 RNA5SP447-201ENST00000363749 119 ntBASIC3.93□□□□□ -1.78
ZNF540Q8NDQ6 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
ZNF540Q8NDQ6 RNU6-444P-201ENST00000383988 108 ntBASIC3.93□□□□□ -1.78
ZNF540Q8NDQ6 U1.1-201ENST00000384101 164 ntBASIC3.93□□□□□ -1.78
ZNF540Q8NDQ6 RNU6ATAC5P-201ENST00000388104 126 ntBASIC3.93□□□□□ -1.78
ZNF540Q8NDQ6 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC3.93□□□□□ -1.78
ZNF540Q8NDQ6 SNORA3C-201ENST00000408792 125 ntBASIC3.93□□□□□ -1.78
ZNF540Q8NDQ6 AMD1P2-201ENST00000412936 992 ntBASIC3.93□□□□□ -1.78
ZNF540Q8NDQ6 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.93□□□□□ -1.78
ZNF540Q8NDQ6 AL159169.1-201ENST00000421119 127 ntBASIC3.93□□□□□ -1.78
ZNF540Q8NDQ6 MORF4L1P7-201ENST00000426038 703 ntBASIC3.93□□□□□ -1.78
ZNF540Q8NDQ6 RPL21P66-201ENST00000426566 466 ntBASIC3.93□□□□□ -1.78
ZNF540Q8NDQ6 AC023141.6-201ENST00000429418 337 ntBASIC3.93□□□□□ -1.78
ZNF540Q8NDQ6 MTCO1P54-201ENST00000430139 712 ntBASIC3.93□□□□□ -1.78
ZNF540Q8NDQ6 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.93□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 93.3 ms