Protein–RNA interactions for Protein: Q86UA1

PRPF39, Pre-mRNA-processing factor 39, humanhuman

Known RBP Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39Q86UA1 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.48□□□□□ -1.69
PRPF39Q86UA1 AC008033.1-201ENST00000216407 1162 ntBASIC4.48□□□□□ -1.69
PRPF39Q86UA1 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC4.48□□□□□ -1.69
PRPF39Q86UA1 RNU6-1176P-201ENST00000390955 107 ntBASIC4.48□□□□□ -1.69
PRPF39Q86UA1 ATP5F1P2-201ENST00000398143 760 ntBASIC4.48□□□□□ -1.69
PRPF39Q86UA1 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC4.48□□□□□ -1.69
PRPF39Q86UA1 RPP40P1-201ENST00000426762 456 ntBASIC4.48□□□□□ -1.69
PRPF39Q86UA1 NDUFA5P7-201ENST00000452914 242 ntBASIC4.48□□□□□ -1.69
PRPF39Q86UA1 DHFRP3-201ENST00000455595 559 ntBASIC4.48□□□□□ -1.69
PRPF39Q86UA1 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC4.48□□□□□ -1.69
PRPF39Q86UA1 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC4.48□□□□□ -1.69
PRPF39Q86UA1 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.48□□□□□ -1.69
PRPF39Q86UA1 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
PRPF39Q86UA1 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC4.48□□□□□ -1.69
PRPF39Q86UA1 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC4.48□□□□□ -1.69
PRPF39Q86UA1 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
PRPF39Q86UA1 NDUFS5P6-201ENST00000529136 295 ntBASIC4.48□□□□□ -1.69
PRPF39Q86UA1 OR8L1P-201ENST00000534005 955 ntBASIC4.48□□□□□ -1.69
PRPF39Q86UA1 OR8K4P-201ENST00000534608 872 ntBASIC4.48□□□□□ -1.69
PRPF39Q86UA1 AC069240.1-201ENST00000548774 375 ntBASIC4.48□□□□□ -1.69
PRPF39Q86UA1 AC087897.1-201ENST00000550134 156 ntBASIC4.48□□□□□ -1.69
PRPF39Q86UA1 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC4.48□□□□□ -1.69
PRPF39Q86UA1 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC4.48□□□□□ -1.69
PRPF39Q86UA1 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.48□□□□□ -1.69
PRPF39Q86UA1 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC4.48□□□□□ -1.69
PRPF39Q86UA1 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.48□□□□□ -1.69
PRPF39Q86UA1 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC4.48□□□□□ -1.69
PRPF39Q86UA1 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC4.48□□□□□ -1.69
PRPF39Q86UA1 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC4.48□□□□□ -1.69
PRPF39Q86UA1 AL009028.1-201ENST00000604895 802 ntBASIC4.48□□□□□ -1.69
PRPF39Q86UA1 AL158050.2-201ENST00000605336 568 ntBASIC4.48□□□□□ -1.69
PRPF39Q86UA1 ARF4P1-201ENST00000605447 541 ntBASIC4.48□□□□□ -1.69
PRPF39Q86UA1 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.48□□□□□ -1.69
PRPF39Q86UA1 AF129408.1-201ENST00000608767 431 ntBASIC4.48□□□□□ -1.69
PRPF39Q86UA1 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC4.48□□□□□ -1.69
PRPF39Q86UA1 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC4.48□□□□□ -1.69
PRPF39Q86UA1 AC103798.2-201ENST00000624292 632 ntBASIC4.48□□□□□ -1.69
PRPF39Q86UA1 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
PRPF39Q86UA1 ELL2P4-201ENST00000446870 1376 ntBASIC4.48□□□□□ -1.69
PRPF39Q86UA1 NMD3P1-201ENST00000439704 1488 ntBASIC4.48□□□□□ -1.69
PRPF39Q86UA1 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
PRPF39Q86UA1 ACTR3BP2-202ENST00000623630 1338 ntBASIC4.47□□□□□ -1.69
PRPF39Q86UA1 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC4.47□□□□□ -1.69
PRPF39Q86UA1 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
PRPF39Q86UA1 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.47□□□□□ -1.69
PRPF39Q86UA1 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
PRPF39Q86UA1 OR5P1P-201ENST00000299512 925 ntBASIC4.47□□□□□ -1.69
PRPF39Q86UA1 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
PRPF39Q86UA1 RNU1-15P-201ENST00000353977 144 ntBASIC4.47□□□□□ -1.69
PRPF39Q86UA1 MIR513A2-201ENST00000385249 127 ntBASIC4.47□□□□□ -1.69
PRPF39Q86UA1 MIR3065-201ENST00000390137 79 ntBASIC4.47□□□□□ -1.69
PRPF39Q86UA1 RNU6-298P-201ENST00000390888 96 ntBASIC4.47□□□□□ -1.69
PRPF39Q86UA1 Y_RNA.578-201ENST00000390903 88 ntBASIC4.47□□□□□ -1.69
PRPF39Q86UA1 LAP3P1-201ENST00000403648 294 ntBASIC4.47□□□□□ -1.69
PRPF39Q86UA1 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.47□□□□□ -1.69
PRPF39Q86UA1 UBTFL3-201ENST00000418934 1024 ntBASIC4.47□□□□□ -1.69
PRPF39Q86UA1 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC4.47□□□□□ -1.69
PRPF39Q86UA1 AC073335.1-201ENST00000427776 363 ntBASIC4.47□□□□□ -1.69
PRPF39Q86UA1 AC004975.1-201ENST00000428733 208 ntBASIC4.47□□□□□ -1.69
PRPF39Q86UA1 HLA-N-201ENST00000437516 135 ntBASIC4.47□□□□□ -1.69
PRPF39Q86UA1 AC114495.1-201ENST00000441274 436 ntBASIC4.47□□□□□ -1.69
PRPF39Q86UA1 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC4.47□□□□□ -1.69
PRPF39Q86UA1 NUTF2P3-201ENST00000448540 384 ntBASIC4.47□□□□□ -1.69
PRPF39Q86UA1 AC009963.2-201ENST00000453431 138 ntBASIC4.47□□□□□ -1.69
PRPF39Q86UA1 AP000893.1-201ENST00000474462 794 ntBASIC4.47□□□□□ -1.69
PRPF39Q86UA1 UBTFL6-201ENST00000477929 1024 ntBASIC4.47□□□□□ -1.69
PRPF39Q86UA1 RAD51AP1P1-201ENST00000484195 1001 ntBASIC4.47□□□□□ -1.69
PRPF39Q86UA1 PARP4P3-201ENST00000510265 317 ntBASIC4.47□□□□□ -1.69
PRPF39Q86UA1 PTGES3P3-201ENST00000511479 482 ntBASIC4.47□□□□□ -1.69
PRPF39Q86UA1 SNORA31.9-201ENST00000516429 84 ntBASIC4.47□□□□□ -1.69
PRPF39Q86UA1 AC023632.1-201ENST00000518463 375 ntBASIC4.47□□□□□ -1.69
PRPF39Q86UA1 LRRC6P1-201ENST00000532188 885 ntBASIC4.47□□□□□ -1.69
PRPF39Q86UA1 DYNLL1P4-201ENST00000549314 266 ntBASIC4.47□□□□□ -1.69
PRPF39Q86UA1 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC4.47□□□□□ -1.69
PRPF39Q86UA1 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC4.47□□□□□ -1.69
PRPF39Q86UA1 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC4.47□□□□□ -1.69
PRPF39Q86UA1 AGGF1P6-201ENST00000569213 976 ntBASIC4.47□□□□□ -1.69
PRPF39Q86UA1 AC074051.3-201ENST00000570238 358 ntBASIC4.47□□□□□ -1.69
PRPF39Q86UA1 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC4.47□□□□□ -1.69
PRPF39Q86UA1 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
PRPF39Q86UA1 AC008638.3-201ENST00000603341 463 ntBASIC4.47□□□□□ -1.69
PRPF39Q86UA1 AC007566.2-201ENST00000603642 413 ntBASIC4.47□□□□□ -1.69
PRPF39Q86UA1 AC079587.1-201ENST00000603846 277 ntBASIC4.47□□□□□ -1.69
PRPF39Q86UA1 AL583856.2-201ENST00000606298 543 ntBASIC4.47□□□□□ -1.69
PRPF39Q86UA1 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC4.47□□□□□ -1.69
PRPF39Q86UA1 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.47□□□□□ -1.69
PRPF39Q86UA1 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
PRPF39Q86UA1 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC4.47□□□□□ -1.69
PRPF39Q86UA1 AC109454.4-201ENST00000623411 649 ntBASIC4.47□□□□□ -1.69
PRPF39Q86UA1 AC004808.1-201ENST00000627671 721 ntBASIC4.47□□□□□ -1.69
PRPF39Q86UA1 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
PRPF39Q86UA1 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.47□□□□□ -1.69
PRPF39Q86UA1 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC4.47□□□□□ -1.69
PRPF39Q86UA1 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
PRPF39Q86UA1 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
PRPF39Q86UA1 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
PRPF39Q86UA1 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
PRPF39Q86UA1 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC4.46□□□□□ -1.69
PRPF39Q86UA1 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC4.46□□□□□ -1.69
PRPF39Q86UA1 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC4.46□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms