Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
USP39Q53GS9 TEX21P-201ENST00000447107 1476 ntBASIC5.24□□□□□ -1.57
USP39Q53GS9 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC5.24□□□□□ -1.57
USP39Q53GS9 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC5.24□□□□□ -1.57
USP39Q53GS9 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
USP39Q53GS9 MAPK10-328ENST00000641553 4009 ntBASIC5.24□□□□□ -1.57
USP39Q53GS9 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
USP39Q53GS9 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
USP39Q53GS9 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
USP39Q53GS9 AC007996.1-201ENST00000620414 2821 ntBASIC5.24□□□□□ -1.57
USP39Q53GS9 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
USP39Q53GS9 ALB-219ENST00000621085 1418 ntTSL 5 BASIC5.23□□□□□ -1.57
USP39Q53GS9 AL353743.4-201ENST00000422653 1547 ntBASIC5.23□□□□□ -1.57
USP39Q53GS9 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC5.23□□□□□ -1.57
USP39Q53GS9 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC5.23□□□□□ -1.57
USP39Q53GS9 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
USP39Q53GS9 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC5.23□□□□□ -1.57
USP39Q53GS9 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC5.23□□□□□ -1.57
USP39Q53GS9 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC5.23□□□□□ -1.57
USP39Q53GS9 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC5.23□□□□□ -1.57
USP39Q53GS9 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC5.23□□□□□ -1.57
USP39Q53GS9 GNAS-202ENST00000306090 477 ntTSL 5 BASIC5.23□□□□□ -1.57
USP39Q53GS9 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC5.23□□□□□ -1.57
USP39Q53GS9 RN7SKP95-201ENST00000362860 303 ntBASIC5.23□□□□□ -1.57
USP39Q53GS9 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
USP39Q53GS9 RNU6-116P-201ENST00000384042 109 ntBASIC5.23□□□□□ -1.57
USP39Q53GS9 ATP5HP3-201ENST00000396994 486 ntBASIC5.23□□□□□ -1.57
USP39Q53GS9 RPS27AP11-201ENST00000402798 447 ntBASIC5.23□□□□□ -1.57
USP39Q53GS9 PIGPP2-201ENST00000411569 458 ntBASIC5.23□□□□□ -1.57
USP39Q53GS9 TPT1P2-201ENST00000413105 503 ntBASIC5.23□□□□□ -1.57
USP39Q53GS9 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
USP39Q53GS9 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC5.23□□□□□ -1.57
USP39Q53GS9 RPL7P44-201ENST00000424827 742 ntBASIC5.23□□□□□ -1.57
USP39Q53GS9 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
USP39Q53GS9 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC5.23□□□□□ -1.57
USP39Q53GS9 YWHAEP5-201ENST00000431545 765 ntBASIC5.23□□□□□ -1.57
USP39Q53GS9 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC5.23□□□□□ -1.57
USP39Q53GS9 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC5.23□□□□□ -1.57
USP39Q53GS9 KNOP1P3-201ENST00000446933 426 ntBASIC5.23□□□□□ -1.57
USP39Q53GS9 NFU1P2-201ENST00000448700 469 ntBASIC5.23□□□□□ -1.57
USP39Q53GS9 AC090804.1-201ENST00000448870 490 ntBASIC5.23□□□□□ -1.57
USP39Q53GS9 DNAJC19P1-201ENST00000455312 319 ntBASIC5.23□□□□□ -1.57
USP39Q53GS9 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC5.23□□□□□ -1.57
USP39Q53GS9 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC5.23□□□□□ -1.57
USP39Q53GS9 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
USP39Q53GS9 RN7SL346P-201ENST00000491561 294 ntBASIC5.23□□□□□ -1.57
USP39Q53GS9 AC140172.1-201ENST00000502928 141 ntBASIC5.23□□□□□ -1.57
USP39Q53GS9 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC5.23□□□□□ -1.57
USP39Q53GS9 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC5.23□□□□□ -1.57
USP39Q53GS9 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC5.23□□□□□ -1.57
USP39Q53GS9 AC046134.1-201ENST00000514454 666 ntBASIC5.23□□□□□ -1.57
USP39Q53GS9 HMGN1P9-201ENST00000515212 298 ntBASIC5.23□□□□□ -1.57
USP39Q53GS9 RNU6-314P-201ENST00000516574 104 ntBASIC5.23□□□□□ -1.57
USP39Q53GS9 SNORA20.3-201ENST00000516880 132 ntBASIC5.23□□□□□ -1.57
USP39Q53GS9 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC5.23□□□□□ -1.57
USP39Q53GS9 AC021006.3-201ENST00000530771 192 ntBASIC5.23□□□□□ -1.57
USP39Q53GS9 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC5.23□□□□□ -1.57
USP39Q53GS9 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC5.23□□□□□ -1.57
USP39Q53GS9 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
USP39Q53GS9 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
USP39Q53GS9 OR7K1P-201ENST00000546439 926 ntBASIC5.23□□□□□ -1.57
USP39Q53GS9 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC5.23□□□□□ -1.57
USP39Q53GS9 AC124947.2-202ENST00000552735 133 ntBASIC5.23□□□□□ -1.57
USP39Q53GS9 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC5.23□□□□□ -1.57
USP39Q53GS9 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC5.23□□□□□ -1.57
USP39Q53GS9 RN7SL290P-201ENST00000578661 300 ntBASIC5.23□□□□□ -1.57
USP39Q53GS9 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC5.23□□□□□ -1.57
USP39Q53GS9 OR4K7P-201ENST00000580232 945 ntBASIC5.23□□□□□ -1.57
USP39Q53GS9 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC5.23□□□□□ -1.57
USP39Q53GS9 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC5.23□□□□□ -1.57
USP39Q53GS9 AL031320.1-201ENST00000604177 357 ntBASIC5.23□□□□□ -1.57
USP39Q53GS9 AC112220.3-201ENST00000605502 502 ntBASIC5.23□□□□□ -1.57
USP39Q53GS9 CR381653.2-201ENST00000624041 768 ntBASIC5.23□□□□□ -1.57
USP39Q53GS9 MIR3688-2-201ENST00000636963 87 ntBASIC5.23□□□□□ -1.57
USP39Q53GS9 FAM157B-203ENST00000639350 358 ntBASIC5.23□□□□□ -1.57
USP39Q53GS9 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
USP39Q53GS9 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
USP39Q53GS9 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
USP39Q53GS9 USP8-204ENST00000425032 3559 ntTSL 2 BASIC5.23□□□□□ -1.57
USP39Q53GS9 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
USP39Q53GS9 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC5.23□□□□□ -1.57
USP39Q53GS9 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
USP39Q53GS9 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
USP39Q53GS9 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
USP39Q53GS9 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
USP39Q53GS9 AC002525.1-201ENST00000624392 1622 ntBASIC5.23□□□□□ -1.57
USP39Q53GS9 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
USP39Q53GS9 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
USP39Q53GS9 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
USP39Q53GS9 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
USP39Q53GS9 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
USP39Q53GS9 IRF5P1-201ENST00000504852 2164 ntBASIC5.22□□□□□ -1.57
USP39Q53GS9 SDAD1P1-202ENST00000524156 2051 ntBASIC5.22□□□□□ -1.57
USP39Q53GS9 AL121950.1-201ENST00000624993 2077 ntBASIC5.22□□□□□ -1.57
USP39Q53GS9 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC5.22□□□□□ -1.57
USP39Q53GS9 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
USP39Q53GS9 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
USP39Q53GS9 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.57
USP39Q53GS9 METTL21EP-201ENST00000298105 713 ntBASIC5.22□□□□□ -1.57
USP39Q53GS9 RNVU1-6-201ENST00000364688 164 ntBASIC5.22□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms