Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 AL672167.1-206ENST00000356293 943 ntBASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 AC092162.1-201ENST00000432828 434 ntBASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 AL353706.1-201ENST00000436728 494 ntBASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 RPL23AP15-201ENST00000450202 459 ntBASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 RN7SL517P-201ENST00000462240 305 ntBASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 AC092324.1-201ENST00000468671 324 ntBASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 AC006511.1-201ENST00000470614 315 ntBASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 AL024509.2-201ENST00000493462 493 ntBASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 AC010424.1-201ENST00000506336 297 ntBASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 KRT19P6-201ENST00000510983 209 ntBASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 RFPL4AP5-201ENST00000514977 504 ntBASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 Y_RNA.695-201ENST00000516715 107 ntBASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 MTCYBP20-201ENST00000524239 1129 ntBASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 EDDM3DP-201ENST00000554692 434 ntBASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 AC012435.1-202ENST00000568772 240 ntBASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 AC008759.1-201ENST00000589783 983 ntBASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 AC024560.3-201ENST00000608482 349 ntBASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 MIR6820-201ENST00000611508 62 ntBASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 AC123768.4-201ENST00000616244 701 ntBASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 AC006927.3-201ENST00000638789 384 ntBASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 AC009643.2-201ENST00000603543 1448 ntBASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 AC090017.1-201ENST00000548612 1779 ntBASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
PTCHD3Q3KNS1 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 OR5BR1P-201ENST00000524992 1330 ntBASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 RNU6-1122P-201ENST00000384449 107 ntBASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 VDAC2P1-201ENST00000399358 958 ntBASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 FABP12P1-201ENST00000401911 322 ntBASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 AL357515.1-201ENST00000402967 542 ntBASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 NIPA2P1-201ENST00000426223 976 ntBASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 AC010881.1-201ENST00000433830 235 ntBASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 COX6CP2-201ENST00000444980 225 ntBASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 RPL26P28-201ENST00000451325 435 ntBASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 VN1R32P-201ENST00000452234 905 ntBASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 RPL10P17-201ENST00000453852 316 ntBASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 AC108078.3-201ENST00000502633 489 ntBASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 MRPS33P2-201ENST00000507850 322 ntBASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 RNU6-202P-201ENST00000515998 96 ntBASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 RNA5SP249-201ENST00000516127 99 ntBASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 RNA5SP228-201ENST00000516232 133 ntBASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 AC090515.3-201ENST00000560431 315 ntBASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 AC074051.3-201ENST00000570238 358 ntBASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 ROCK1P1-201ENST00000573767 549 ntBASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 AC119751.7-201ENST00000600494 245 ntBASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 MTCYBP22-201ENST00000603788 447 ntBASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 AC092354.1-201ENST00000606057 376 ntBASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 AC106028.5-201ENST00000610332 395 ntBASIC4.77□□□□□ -1.65
PTCHD3Q3KNS1 AC116447.1-201ENST00000613153 453 ntBASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 98.3 ms