Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC4.48□□□□□ -1.69
COL28A1Q2UY09 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
COL28A1Q2UY09 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
COL28A1Q2UY09 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC4.48□□□□□ -1.69
COL28A1Q2UY09 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
COL28A1Q2UY09 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC4.48□□□□□ -1.69
COL28A1Q2UY09 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
COL28A1Q2UY09 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL28A1Q2UY09 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
COL28A1Q2UY09 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.47□□□□□ -1.69
COL28A1Q2UY09 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
COL28A1Q2UY09 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.47□□□□□ -1.69
COL28A1Q2UY09 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.47□□□□□ -1.69
COL28A1Q2UY09 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
COL28A1Q2UY09 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
COL28A1Q2UY09 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.47□□□□□ -1.69
COL28A1Q2UY09 MIR483-201ENST00000385070 76 ntBASIC4.47□□□□□ -1.69
COL28A1Q2UY09 AC119751.3-201ENST00000399720 670 ntBASIC4.47□□□□□ -1.69
COL28A1Q2UY09 PRRC2CP1-201ENST00000404428 159 ntBASIC4.47□□□□□ -1.69
COL28A1Q2UY09 AL121834.1-202ENST00000404494 277 ntBASIC4.47□□□□□ -1.69
COL28A1Q2UY09 HNRNPDP2-201ENST00000406475 478 ntBASIC4.47□□□□□ -1.69
COL28A1Q2UY09 ELOCP9-201ENST00000418624 239 ntBASIC4.47□□□□□ -1.69
COL28A1Q2UY09 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC4.47□□□□□ -1.69
COL28A1Q2UY09 AC007435.1-201ENST00000421086 415 ntBASIC4.47□□□□□ -1.69
COL28A1Q2UY09 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC4.47□□□□□ -1.69
COL28A1Q2UY09 DPRXP1-201ENST00000426312 460 ntBASIC4.47□□□□□ -1.69
COL28A1Q2UY09 Z93242.1-201ENST00000427102 353 ntBASIC4.47□□□□□ -1.69
COL28A1Q2UY09 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC4.47□□□□□ -1.69
COL28A1Q2UY09 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC4.47□□□□□ -1.69
COL28A1Q2UY09 TRIM60P3Y-201ENST00000432201 673 ntBASIC4.47□□□□□ -1.69
COL28A1Q2UY09 RPL37P1-201ENST00000432310 284 ntBASIC4.47□□□□□ -1.69
COL28A1Q2UY09 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC4.47□□□□□ -1.69
COL28A1Q2UY09 AC092162.1-201ENST00000432828 434 ntBASIC4.47□□□□□ -1.69
COL28A1Q2UY09 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC4.47□□□□□ -1.69
COL28A1Q2UY09 PPIAP17-201ENST00000438507 471 ntBASIC4.47□□□□□ -1.69
COL28A1Q2UY09 USP9YP22-201ENST00000438971 294 ntBASIC4.47□□□□□ -1.69
COL28A1Q2UY09 AC000111.2-201ENST00000448200 210 ntBASIC4.47□□□□□ -1.69
COL28A1Q2UY09 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC4.47□□□□□ -1.69
COL28A1Q2UY09 PRSS3P4-201ENST00000453323 162 ntBASIC4.47□□□□□ -1.69
COL28A1Q2UY09 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC4.47□□□□□ -1.69
COL28A1Q2UY09 AL139824.2-201ENST00000458731 1095 ntBASIC4.47□□□□□ -1.69
COL28A1Q2UY09 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC4.47□□□□□ -1.69
COL28A1Q2UY09 AC108751.2-201ENST00000469993 231 ntBASIC4.47□□□□□ -1.69
COL28A1Q2UY09 AC104971.1-201ENST00000495117 578 ntBASIC4.47□□□□□ -1.69
COL28A1Q2UY09 DYNLL1P6-201ENST00000503440 264 ntBASIC4.47□□□□□ -1.69
COL28A1Q2UY09 FTH1P24-201ENST00000503502 462 ntBASIC4.47□□□□□ -1.69
COL28A1Q2UY09 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC4.47□□□□□ -1.69
COL28A1Q2UY09 STMN1P2-201ENST00000508435 439 ntBASIC4.47□□□□□ -1.69
COL28A1Q2UY09 RNU6-488P-201ENST00000515918 99 ntBASIC4.47□□□□□ -1.69
COL28A1Q2UY09 RNA5SP249-201ENST00000516127 99 ntBASIC4.47□□□□□ -1.69
COL28A1Q2UY09 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC4.47□□□□□ -1.69
COL28A1Q2UY09 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC4.47□□□□□ -1.69
COL28A1Q2UY09 OR4U1P-201ENST00000554958 912 ntBASIC4.47□□□□□ -1.69
COL28A1Q2UY09 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC4.47□□□□□ -1.69
COL28A1Q2UY09 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC4.47□□□□□ -1.69
COL28A1Q2UY09 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC4.47□□□□□ -1.69
COL28A1Q2UY09 AC008739.3-201ENST00000603262 127 ntBASIC4.47□□□□□ -1.69
COL28A1Q2UY09 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC4.47□□□□□ -1.69
COL28A1Q2UY09 AC025588.2-201ENST00000604851 466 ntBASIC4.47□□□□□ -1.69
COL28A1Q2UY09 AC012409.3-201ENST00000611343 981 ntBASIC4.47□□□□□ -1.69
COL28A1Q2UY09 AC023158.2-201ENST00000614876 543 ntBASIC4.47□□□□□ -1.69
COL28A1Q2UY09 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC4.47□□□□□ -1.69
COL28A1Q2UY09 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
COL28A1Q2UY09 AP002782.1-201ENST00000623107 614 ntBASIC4.47□□□□□ -1.69
COL28A1Q2UY09 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC4.47□□□□□ -1.69
COL28A1Q2UY09 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL28A1Q2UY09 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
COL28A1Q2UY09 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
COL28A1Q2UY09 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL28A1Q2UY09 XPOTP1-201ENST00000443317 2398 ntBASIC4.47□□□□□ -1.69
COL28A1Q2UY09 AC009643.2-201ENST00000603543 1448 ntBASIC4.46□□□□□ -1.69
COL28A1Q2UY09 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC4.46□□□□□ -1.69
COL28A1Q2UY09 AC008758.3-201ENST00000507003 1829 ntBASIC4.46□□□□□ -1.69
COL28A1Q2UY09 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC4.46□□□□□ -1.69
COL28A1Q2UY09 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
COL28A1Q2UY09 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.46□□□□□ -1.69
COL28A1Q2UY09 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.46□□□□□ -1.7
COL28A1Q2UY09 ACTR3BP5-201ENST00000448440 1479 ntBASIC4.46□□□□□ -1.7
COL28A1Q2UY09 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL28A1Q2UY09 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
COL28A1Q2UY09 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL28A1Q2UY09 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL28A1Q2UY09 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
COL28A1Q2UY09 AL022722.2-201ENST00000402519 180 ntBASIC4.46□□□□□ -1.7
COL28A1Q2UY09 FCF1P5-201ENST00000406490 482 ntBASIC4.46□□□□□ -1.7
COL28A1Q2UY09 AL590609.2-201ENST00000421430 368 ntBASIC4.46□□□□□ -1.7
COL28A1Q2UY09 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC4.46□□□□□ -1.7
COL28A1Q2UY09 RPS29P17-201ENST00000430795 166 ntBASIC4.46□□□□□ -1.7
COL28A1Q2UY09 MOB1AP1-201ENST00000430903 535 ntBASIC4.46□□□□□ -1.7
COL28A1Q2UY09 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
COL28A1Q2UY09 RAB11AP1-201ENST00000442978 646 ntBASIC4.46□□□□□ -1.7
COL28A1Q2UY09 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
COL28A1Q2UY09 AC104306.1-201ENST00000449702 371 ntBASIC4.46□□□□□ -1.7
COL28A1Q2UY09 RN7SL517P-201ENST00000462240 305 ntBASIC4.46□□□□□ -1.7
COL28A1Q2UY09 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC4.46□□□□□ -1.7
COL28A1Q2UY09 RPL21P126-201ENST00000470049 478 ntBASIC4.46□□□□□ -1.7
COL28A1Q2UY09 AC011979.1-201ENST00000472300 483 ntBASIC4.46□□□□□ -1.7
COL28A1Q2UY09 AC021146.5-201ENST00000503544 545 ntBASIC4.46□□□□□ -1.7
COL28A1Q2UY09 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC4.46□□□□□ -1.7
COL28A1Q2UY09 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC4.46□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 85.1 ms