Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC3.81□□□□□ -1.8
CDX1P47902 AL390838.2-201ENST00000602394 274 ntBASIC3.81□□□□□ -1.8
CDX1P47902 AC083899.3-201ENST00000603413 594 ntBASIC3.81□□□□□ -1.8
CDX1P47902 AL391358.1-201ENST00000605342 190 ntBASIC3.81□□□□□ -1.8
CDX1P47902 AC069545.1-201ENST00000605671 358 ntBASIC3.81□□□□□ -1.8
CDX1P47902 AL513477.2-201ENST00000607858 568 ntBASIC3.81□□□□□ -1.8
CDX1P47902 AC024257.5-201ENST00000612739 531 ntBASIC3.81□□□□□ -1.8
CDX1P47902 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC3.81□□□□□ -1.8
CDX1P47902 AC006065.5-201ENST00000623427 349 ntBASIC3.81□□□□□ -1.8
CDX1P47902 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC3.81□□□□□ -1.8
CDX1P47902 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC3.81□□□□□ -1.8
CDX1P47902 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CDX1P47902 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
CDX1P47902 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
CDX1P47902 AL592148.3-201ENST00000608771 2646 ntBASIC3.81□□□□□ -1.8
CDX1P47902 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
CDX1P47902 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
CDX1P47902 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CDX1P47902 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC3.8□□□□□ -1.8
CDX1P47902 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CDX1P47902 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC3.8□□□□□ -1.8
CDX1P47902 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC3.8□□□□□ -1.8
CDX1P47902 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CDX1P47902 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
CDX1P47902 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC3.8□□□□□ -1.8
CDX1P47902 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
CDX1P47902 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC3.8□□□□□ -1.8
CDX1P47902 NACA3P-201ENST00000359690 648 ntBASIC3.8□□□□□ -1.8
CDX1P47902 RNVU1-3-201ENST00000364313 161 ntBASIC3.8□□□□□ -1.8
CDX1P47902 SUGT1P1-201ENST00000379514 476 ntBASIC3.8□□□□□ -1.8
CDX1P47902 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CDX1P47902 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CDX1P47902 TANK-206ENST00000406287 875 ntTSL 5 BASIC3.8□□□□□ -1.8
CDX1P47902 RNU2-42P-201ENST00000410697 113 ntBASIC3.8□□□□□ -1.8
CDX1P47902 RNU4-22P-201ENST00000411058 166 ntBASIC3.8□□□□□ -1.8
CDX1P47902 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC3.8□□□□□ -1.8
CDX1P47902 AL133384.1-201ENST00000412744 351 ntBASIC3.8□□□□□ -1.8
CDX1P47902 AC005517.2-201ENST00000424673 553 ntBASIC3.8□□□□□ -1.8
CDX1P47902 RPL21P43-201ENST00000425440 472 ntBASIC3.8□□□□□ -1.8
CDX1P47902 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CDX1P47902 RPL31P54-201ENST00000429803 370 ntBASIC3.8□□□□□ -1.8
CDX1P47902 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC3.8□□□□□ -1.8
CDX1P47902 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC3.8□□□□□ -1.8
CDX1P47902 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
CDX1P47902 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC3.8□□□□□ -1.8
CDX1P47902 AC234781.3-201ENST00000452540 973 ntBASIC3.8□□□□□ -1.8
CDX1P47902 AL691482.1-201ENST00000453255 87 ntBASIC3.8□□□□□ -1.8
CDX1P47902 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC3.8□□□□□ -1.8
CDX1P47902 AC005410.1-202ENST00000460347 485 ntBASIC3.8□□□□□ -1.8
CDX1P47902 RPL23AP56-201ENST00000460778 453 ntBASIC3.8□□□□□ -1.8
CDX1P47902 AC018635.1-201ENST00000468292 1030 ntBASIC3.8□□□□□ -1.8
CDX1P47902 RPS29P22-201ENST00000472363 168 ntBASIC3.8□□□□□ -1.8
CDX1P47902 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC3.8□□□□□ -1.8
CDX1P47902 AC012158.1-204ENST00000483430 465 ntBASIC3.8□□□□□ -1.8
CDX1P47902 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CDX1P47902 AL592156.1-201ENST00000508758 304 ntBASIC3.8□□□□□ -1.8
CDX1P47902 AC006499.6-201ENST00000511169 607 ntBASIC3.8□□□□□ -1.8
CDX1P47902 RNU4-60P-201ENST00000517239 135 ntBASIC3.8□□□□□ -1.8
CDX1P47902 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC3.8□□□□□ -1.8
CDX1P47902 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC3.8□□□□□ -1.8
CDX1P47902 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC3.8□□□□□ -1.8
CDX1P47902 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC3.8□□□□□ -1.8
CDX1P47902 AC090502.2-201ENST00000549267 280 ntBASIC3.8□□□□□ -1.8
CDX1P47902 AC107016.1-201ENST00000550463 337 ntBASIC3.8□□□□□ -1.8
CDX1P47902 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC3.8□□□□□ -1.8
CDX1P47902 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC3.8□□□□□ -1.8
CDX1P47902 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC3.8□□□□□ -1.8
CDX1P47902 AC091042.1-201ENST00000579213 173 ntBASIC3.8□□□□□ -1.8
CDX1P47902 AC015688.2-201ENST00000584523 262 ntBASIC3.8□□□□□ -1.8
CDX1P47902 AL512782.1-201ENST00000603093 364 ntBASIC3.8□□□□□ -1.8
CDX1P47902 AC112230.1-201ENST00000604342 547 ntBASIC3.8□□□□□ -1.8
CDX1P47902 MKKS-203ENST00000609375 882 ntTSL 2 BASIC3.8□□□□□ -1.8
CDX1P47902 U73479.1-201ENST00000618062 168 ntBASIC3.8□□□□□ -1.8
CDX1P47902 AC103858.2-201ENST00000621471 543 ntBASIC3.8□□□□□ -1.8
CDX1P47902 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC3.8□□□□□ -1.8
CDX1P47902 AL359715.5-201ENST00000623431 443 ntBASIC3.8□□□□□ -1.8
CDX1P47902 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC3.8□□□□□ -1.8
CDX1P47902 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
CDX1P47902 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC3.8□□□□□ -1.8
CDX1P47902 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CDX1P47902 MTCO1P24-201ENST00000515438 1558 ntBASIC3.8□□□□□ -1.8
CDX1P47902 SAMMSON-226ENST00000642089 1582 ntBASIC3.8□□□□□ -1.8
CDX1P47902 PABPC1P7-201ENST00000413177 1513 ntBASIC3.8□□□□□ -1.8
CDX1P47902 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CDX1P47902 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC3.8□□□□□ -1.8
CDX1P47902 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC3.8□□□□□ -1.8
CDX1P47902 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CDX1P47902 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CDX1P47902 SAGE4P-201ENST00000442271 3381 ntBASIC3.79□□□□□ -1.8
CDX1P47902 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CDX1P47902 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CDX1P47902 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC3.79□□□□□ -1.8
CDX1P47902 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CDX1P47902 OR11H5P-202ENST00000641612 1325 ntBASIC3.79□□□□□ -1.8
CDX1P47902 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CDX1P47902 RNU6-413P-201ENST00000384115 107 ntBASIC3.79□□□□□ -1.8
CDX1P47902 MIR3074-201ENST00000384885 81 ntBASIC3.79□□□□□ -1.8
CDX1P47902 MT-TC-201ENST00000387405 66 ntBASIC3.79□□□□□ -1.8
CDX1P47902 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CDX1P47902 GLS-204ENST00000409428 816 ntTSL 2 BASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 144.9 ms