Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC4.75□□□□□ -1.65
BDNFP23560 AP001160.4-201ENST00000596971 382 ntBASIC4.75□□□□□ -1.65
BDNFP23560 AC020910.2-201ENST00000603635 610 ntBASIC4.75□□□□□ -1.65
BDNFP23560 AC025588.3-201ENST00000604182 274 ntBASIC4.75□□□□□ -1.65
BDNFP23560 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
BDNFP23560 AP000238.1-201ENST00000608759 426 ntBASIC4.75□□□□□ -1.65
BDNFP23560 AC099676.1-201ENST00000608886 657 ntBASIC4.75□□□□□ -1.65
BDNFP23560 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
BDNFP23560 RNU6-1192P-201ENST00000612197 107 ntBASIC4.75□□□□□ -1.65
BDNFP23560 MIR6798-201ENST00000612887 67 ntBASIC4.75□□□□□ -1.65
BDNFP23560 RNU6-489P-201ENST00000618289 107 ntBASIC4.75□□□□□ -1.65
BDNFP23560 VN1R7P-201ENST00000619242 903 ntBASIC4.75□□□□□ -1.65
BDNFP23560 AL356121.2-201ENST00000624715 780 ntBASIC4.75□□□□□ -1.65
BDNFP23560 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.75□□□□□ -1.65
BDNFP23560 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
BDNFP23560 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
BDNFP23560 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
BDNFP23560 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
BDNFP23560 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC4.75□□□□□ -1.65
BDNFP23560 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.75□□□□□ -1.65
BDNFP23560 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
BDNFP23560 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC4.75□□□□□ -1.65
BDNFP23560 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
BDNFP23560 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.75□□□□□ -1.65
BDNFP23560 EXOC5P1-201ENST00000510543 1969 ntBASIC4.74□□□□□ -1.65
BDNFP23560 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.74□□□□□ -1.65
BDNFP23560 AL136520.1-201ENST00000600311 1322 ntBASIC4.74□□□□□ -1.65
BDNFP23560 ACTR3BP2-202ENST00000623630 1338 ntBASIC4.74□□□□□ -1.65
BDNFP23560 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
BDNFP23560 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
BDNFP23560 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.74□□□□□ -1.65
BDNFP23560 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
BDNFP23560 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
BDNFP23560 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC4.74□□□□□ -1.65
BDNFP23560 AP001350.1-201ENST00000601906 1524 ntBASIC4.74□□□□□ -1.65
BDNFP23560 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC4.74□□□□□ -1.65
BDNFP23560 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
BDNFP23560 SNORD6-201ENST00000365444 73 ntBASIC4.74□□□□□ -1.65
BDNFP23560 RNU4-25P-201ENST00000410569 230 ntBASIC4.74□□□□□ -1.65
BDNFP23560 RNU2-71P-201ENST00000411395 189 ntBASIC4.74□□□□□ -1.65
BDNFP23560 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC4.74□□□□□ -1.65
BDNFP23560 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC4.74□□□□□ -1.65
BDNFP23560 PTP4A1P7-201ENST00000423476 514 ntBASIC4.74□□□□□ -1.65
BDNFP23560 Z74021.1-201ENST00000423610 407 ntBASIC4.74□□□□□ -1.65
BDNFP23560 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC4.74□□□□□ -1.65
BDNFP23560 CBX1P1-201ENST00000440184 427 ntBASIC4.74□□□□□ -1.65
BDNFP23560 AL031584.1-201ENST00000447169 754 ntBASIC4.74□□□□□ -1.65
BDNFP23560 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
BDNFP23560 RPS27AP17-201ENST00000463344 455 ntBASIC4.74□□□□□ -1.65
BDNFP23560 TRAV31-201ENST00000502780 342 ntBASIC4.74□□□□□ -1.65
BDNFP23560 OR5H5P-201ENST00000503164 928 ntBASIC4.74□□□□□ -1.65
BDNFP23560 KLRA1P-201ENST00000503499 986 ntBASIC4.74□□□□□ -1.65
BDNFP23560 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC4.74□□□□□ -1.65
BDNFP23560 ZNF192P1-203ENST00000565888 810 ntBASIC4.74□□□□□ -1.65
BDNFP23560 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC4.74□□□□□ -1.65
BDNFP23560 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC4.74□□□□□ -1.65
BDNFP23560 AC099785.1-201ENST00000605697 437 ntBASIC4.74□□□□□ -1.65
BDNFP23560 AC083809.1-201ENST00000615051 472 ntBASIC4.74□□□□□ -1.65
BDNFP23560 AC011944.2-201ENST00000624440 683 ntBASIC4.74□□□□□ -1.65
BDNFP23560 AP000720.1-201ENST00000625091 483 ntBASIC4.74□□□□□ -1.65
BDNFP23560 AC006065.6-201ENST00000625201 545 ntBASIC4.74□□□□□ -1.65
BDNFP23560 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.74□□□□□ -1.65
BDNFP23560 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
BDNFP23560 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.74□□□□□ -1.65
BDNFP23560 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
BDNFP23560 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC4.74□□□□□ -1.65
BDNFP23560 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC4.74□□□□□ -1.65
BDNFP23560 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
BDNFP23560 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
BDNFP23560 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
BDNFP23560 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
BDNFP23560 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.73□□□□□ -1.65
BDNFP23560 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
BDNFP23560 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.73□□□□□ -1.65
BDNFP23560 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC4.73□□□□□ -1.65
BDNFP23560 OR4A15-201ENST00000314706 1035 ntBASIC4.73□□□□□ -1.65
BDNFP23560 RNA5SP509-201ENST00000364577 119 ntBASIC4.73□□□□□ -1.65
BDNFP23560 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC4.73□□□□□ -1.65
BDNFP23560 RNU6-761P-201ENST00000384148 107 ntBASIC4.73□□□□□ -1.65
BDNFP23560 SNORD116-23-201ENST00000384645 92 ntBASIC4.73□□□□□ -1.65
BDNFP23560 AL035405.1-201ENST00000400795 710 ntBASIC4.73□□□□□ -1.65
BDNFP23560 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
BDNFP23560 RAB28P1-201ENST00000411517 641 ntBASIC4.73□□□□□ -1.65
BDNFP23560 AL024507.1-201ENST00000412741 274 ntBASIC4.73□□□□□ -1.65
BDNFP23560 MTCO3P12-201ENST00000416718 547 ntBASIC4.73□□□□□ -1.65
BDNFP23560 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC4.73□□□□□ -1.65
BDNFP23560 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC4.73□□□□□ -1.65
BDNFP23560 AC092393.1-201ENST00000439625 742 ntBASIC4.73□□□□□ -1.65
BDNFP23560 RPS26P2-201ENST00000440331 348 ntBASIC4.73□□□□□ -1.65
BDNFP23560 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC4.73□□□□□ -1.65
BDNFP23560 AC104073.1-201ENST00000451988 151 ntBASIC4.73□□□□□ -1.65
BDNFP23560 AC022034.3-201ENST00000471393 478 ntBASIC4.73□□□□□ -1.65
BDNFP23560 AC093801.2-201ENST00000503966 1050 ntBASIC4.73□□□□□ -1.65
BDNFP23560 AC023632.1-201ENST00000518463 375 ntBASIC4.73□□□□□ -1.65
BDNFP23560 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC4.73□□□□□ -1.65
BDNFP23560 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC4.73□□□□□ -1.65
BDNFP23560 SMILR-201ENST00000533992 553 ntTSL 4 BASIC4.73□□□□□ -1.65
BDNFP23560 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
BDNFP23560 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC4.73□□□□□ -1.65
BDNFP23560 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.73□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms