Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 RNU6-1181P-201ENST00000384191 106 ntBASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 MIR525-201ENST00000384978 85 ntBASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 RNU6-837P-201ENST00000391056 108 ntBASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 AL138880.1-201ENST00000405824 642 ntBASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 TANK-206ENST00000406287 875 ntTSL 5 BASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 CRYBB2P1-203ENST00000415709 538 ntBASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 AL391219.1-201ENST00000422570 483 ntBASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 UBE2V1P3-201ENST00000439651 417 ntBASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 RPL36AP15-201ENST00000444514 266 ntBASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 MTND1P33-201ENST00000446251 917 ntBASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 HMGB3P22-202ENST00000451823 572 ntBASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 AC006517.1-201ENST00000480485 328 ntBASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 HMGB1P38-201ENST00000490557 577 ntBASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 KRT19P6-201ENST00000510983 209 ntBASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 IGKV2-23-201ENST00000518729 323 ntBASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 ASB8-204ENST00000536071 568 ntTSL 4 BASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 AC008687.2-201ENST00000597865 520 ntBASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 AC079880.2-201ENST00000603790 1213 ntBASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 AC092653.1-201ENST00000608509 531 ntBASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 AC073569.3-201ENST00000619055 682 ntBASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 AL359715.5-201ENST00000623431 443 ntBASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 AL592148.3-201ENST00000608771 2646 ntBASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC3.97□□□□□ -1.77
ZNF540Q8NDQ6 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.77
ZNF540Q8NDQ6 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.96□□□□□ -1.77
ZNF540Q8NDQ6 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 RNU6-1151P-201ENST00000384684 107 ntBASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 SNORD66.1-201ENST00000391230 76 ntBASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 FABP12P1-201ENST00000401911 322 ntBASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 RPS3AP9-201ENST00000417027 792 ntBASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 AL161631.1-201ENST00000417933 486 ntBASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 UQCRBP1-201ENST00000421129 336 ntBASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 HMGB3P5-201ENST00000428894 612 ntBASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 RPS27AP17-201ENST00000463344 455 ntBASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 RN7SKP116-201ENST00000516902 319 ntBASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 CASP1-212ENST00000531166 300 ntTSL 5 BASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 AC107016.1-201ENST00000550463 337 ntBASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 AC136624.4-201ENST00000573044 370 ntBASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 MIR4277-201ENST00000578298 84 ntBASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 MIR3690-201ENST00000580266 75 ntBASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 TEX41-238ENST00000604253 709 ntTSL 5 BASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 AL133338.2-201ENST00000604292 736 ntBASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 MIR7703-201ENST00000620784 77 ntBASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 AC006065.6-201ENST00000625201 545 ntBASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 MTCO1P6-201ENST00000481192 1384 ntBASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
ZNF540Q8NDQ6 AP001350.1-201ENST00000601906 1524 ntBASIC3.95□□□□□ -1.78
ZNF540Q8NDQ6 AC125257.1-201ENST00000560400 2930 ntBASIC3.95□□□□□ -1.78
ZNF540Q8NDQ6 LINC02471-203ENST00000641941 4752 ntBASIC3.95□□□□□ -1.78
ZNF540Q8NDQ6 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
ZNF540Q8NDQ6 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
ZNF540Q8NDQ6 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
ZNF540Q8NDQ6 RNA5SP295-201ENST00000362655 121 ntBASIC3.95□□□□□ -1.78
ZNF540Q8NDQ6 ATP5F1P6-201ENST00000402768 767 ntBASIC3.95□□□□□ -1.78
ZNF540Q8NDQ6 AL356967.1-201ENST00000406305 431 ntBASIC3.95□□□□□ -1.78
ZNF540Q8NDQ6 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC3.95□□□□□ -1.78
ZNF540Q8NDQ6 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC3.95□□□□□ -1.78
ZNF540Q8NDQ6 DNAJA1P1-201ENST00000425106 1187 ntBASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 117.3 ms