Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 MTND2P13-201ENST00000577438 1039 ntBASIC2.06□□□□□ -2.08
LINC00643Q86TS7 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC2.06□□□□□ -2.08
LINC00643Q86TS7 AC083760.1-201ENST00000589621 670 ntBASIC2.06□□□□□ -2.08
LINC00643Q86TS7 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC2.06□□□□□ -2.08
LINC00643Q86TS7 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC2.06□□□□□ -2.08
LINC00643Q86TS7 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC2.06□□□□□ -2.08
LINC00643Q86TS7 AC123768.4-201ENST00000616244 701 ntBASIC2.06□□□□□ -2.08
LINC00643Q86TS7 AC091903.1-201ENST00000624322 454 ntBASIC2.06□□□□□ -2.08
LINC00643Q86TS7 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
LINC00643Q86TS7 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC2.06□□□□□ -2.08
LINC00643Q86TS7 AC032011.1-201ENST00000611703 1549 ntBASIC2.06□□□□□ -2.08
LINC00643Q86TS7 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
LINC00643Q86TS7 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
LINC00643Q86TS7 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC2.05□□□□□ -2.08
LINC00643Q86TS7 METTL21EP-201ENST00000298105 713 ntBASIC2.05□□□□□ -2.08
LINC00643Q86TS7 ANAPC10-201ENST00000309439 868 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
LINC00643Q86TS7 MIR607-201ENST00000385241 96 ntBASIC2.05□□□□□ -2.08
LINC00643Q86TS7 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
LINC00643Q86TS7 AL049697.2-201ENST00000403708 294 ntBASIC2.05□□□□□ -2.08
LINC00643Q86TS7 AL590004.2-201ENST00000404787 371 ntBASIC2.05□□□□□ -2.08
LINC00643Q86TS7 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.05□□□□□ -2.08
LINC00643Q86TS7 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC2.05□□□□□ -2.08
LINC00643Q86TS7 Z97055.1-201ENST00000419730 712 ntBASIC2.05□□□□□ -2.08
LINC00643Q86TS7 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC2.05□□□□□ -2.08
LINC00643Q86TS7 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC2.05□□□□□ -2.08
LINC00643Q86TS7 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC2.05□□□□□ -2.08
LINC00643Q86TS7 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
LINC00643Q86TS7 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC2.05□□□□□ -2.08
LINC00643Q86TS7 AC027673.1-201ENST00000456245 405 ntBASIC2.05□□□□□ -2.08
LINC00643Q86TS7 AC094085.1-201ENST00000468914 584 ntBASIC2.05□□□□□ -2.08
LINC00643Q86TS7 VN1R17P-201ENST00000472048 1090 ntBASIC2.05□□□□□ -2.08
LINC00643Q86TS7 OR2AO1P-201ENST00000476497 403 ntBASIC2.05□□□□□ -2.08
LINC00643Q86TS7 RPL9P33-201ENST00000484311 566 ntBASIC2.05□□□□□ -2.08
LINC00643Q86TS7 AC023050.1-201ENST00000498198 304 ntBASIC2.05□□□□□ -2.08
LINC00643Q86TS7 AC090071.1-201ENST00000507713 644 ntBASIC2.05□□□□□ -2.08
LINC00643Q86TS7 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC2.05□□□□□ -2.08
LINC00643Q86TS7 AC008958.1-201ENST00000511047 682 ntBASIC2.05□□□□□ -2.08
LINC00643Q86TS7 RN7SKP66-201ENST00000516681 231 ntBASIC2.05□□□□□ -2.08
LINC00643Q86TS7 SNORD59.2-201ENST00000516873 68 ntBASIC2.05□□□□□ -2.08
LINC00643Q86TS7 AP001207.1-201ENST00000524051 481 ntBASIC2.05□□□□□ -2.08
LINC00643Q86TS7 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC2.05□□□□□ -2.08
LINC00643Q86TS7 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC2.05□□□□□ -2.08
LINC00643Q86TS7 AC125611.2-201ENST00000551907 647 ntBASIC2.05□□□□□ -2.08
LINC00643Q86TS7 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC2.05□□□□□ -2.08
LINC00643Q86TS7 MIR3690-201ENST00000580266 75 ntBASIC2.05□□□□□ -2.08
LINC00643Q86TS7 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC2.05□□□□□ -2.08
LINC00643Q86TS7 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC2.05□□□□□ -2.08
LINC00643Q86TS7 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC2.05□□□□□ -2.08
LINC00643Q86TS7 AC100847.1-201ENST00000611316 481 ntBASIC2.05□□□□□ -2.08
LINC00643Q86TS7 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC2.05□□□□□ -2.08
LINC00643Q86TS7 CYCSP41-201ENST00000616920 296 ntBASIC2.05□□□□□ -2.08
LINC00643Q86TS7 AC002076.2-201ENST00000617362 122 ntBASIC2.05□□□□□ -2.08
LINC00643Q86TS7 SNORD39.4-201ENST00000620099 78 ntBASIC2.05□□□□□ -2.08
LINC00643Q86TS7 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC2.05□□□□□ -2.08
LINC00643Q86TS7 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC2.05□□□□□ -2.08
LINC00643Q86TS7 TMEM55A-206ENST00000630164 171 ntTSL 5 BASIC2.05□□□□□ -2.08
LINC00643Q86TS7 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
LINC00643Q86TS7 CCNE2-202ENST00000396133 1361 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
LINC00643Q86TS7 BCLAF1P1-201ENST00000505813 2752 ntBASIC2.05□□□□□ -2.08
LINC00643Q86TS7 AP002907.1-201ENST00000606361 1430 ntBASIC2.05□□□□□ -2.08
LINC00643Q86TS7 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
LINC00643Q86TS7 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC2.05□□□□□ -2.08
LINC00643Q86TS7 AC002546.1-201ENST00000588041 2504 ntBASIC2.05□□□□□ -2.08
LINC00643Q86TS7 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.04□□□□□ -2.08
LINC00643Q86TS7 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.04□□□□□ -2.08
LINC00643Q86TS7 RN7SKP257-201ENST00000364525 309 ntBASIC2.04□□□□□ -2.08
LINC00643Q86TS7 MIR301B-201ENST00000390813 78 ntBASIC2.04□□□□□ -2.08
LINC00643Q86TS7 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC2.04□□□□□ -2.08
LINC00643Q86TS7 AC073310.1-201ENST00000423226 1033 ntBASIC2.04□□□□□ -2.08
LINC00643Q86TS7 USP9YP36-201ENST00000424581 829 ntBASIC2.04□□□□□ -2.08
LINC00643Q86TS7 LINC01363-202ENST00000428030 930 ntTSL 3 BASIC2.04□□□□□ -2.08
LINC00643Q86TS7 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC2.04□□□□□ -2.08
LINC00643Q86TS7 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC2.04□□□□□ -2.08
LINC00643Q86TS7 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
LINC00643Q86TS7 COX6B1P7-201ENST00000430845 235 ntBASIC2.04□□□□□ -2.08
LINC00643Q86TS7 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC2.04□□□□□ -2.08
LINC00643Q86TS7 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC2.04□□□□□ -2.08
LINC00643Q86TS7 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.04□□□□□ -2.08
LINC00643Q86TS7 AL592437.1-201ENST00000443781 492 ntBASIC2.04□□□□□ -2.08
LINC00643Q86TS7 SPRYD7P1-201ENST00000443861 570 ntBASIC2.04□□□□□ -2.08
LINC00643Q86TS7 UBBP3-201ENST00000445497 241 ntBASIC2.04□□□□□ -2.08
LINC00643Q86TS7 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC2.04□□□□□ -2.08
LINC00643Q86TS7 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC2.04□□□□□ -2.08
LINC00643Q86TS7 RN7SL174P-201ENST00000475578 289 ntBASIC2.04□□□□□ -2.08
LINC00643Q86TS7 AC090525.1-201ENST00000479116 478 ntBASIC2.04□□□□□ -2.08
LINC00643Q86TS7 SNRPCP11-201ENST00000492453 205 ntBASIC2.04□□□□□ -2.08
LINC00643Q86TS7 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
LINC00643Q86TS7 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC2.04□□□□□ -2.08
LINC00643Q86TS7 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
LINC00643Q86TS7 OR5H4P-201ENST00000510851 923 ntBASIC2.04□□□□□ -2.08
LINC00643Q86TS7 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC2.04□□□□□ -2.08
LINC00643Q86TS7 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC2.04□□□□□ -2.08
LINC00643Q86TS7 RN7SKP244-201ENST00000516513 307 ntBASIC2.04□□□□□ -2.08
LINC00643Q86TS7 RNU6-711P-201ENST00000517255 106 ntBASIC2.04□□□□□ -2.08
LINC00643Q86TS7 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC2.04□□□□□ -2.08
LINC00643Q86TS7 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC2.04□□□□□ -2.08
LINC00643Q86TS7 IGKV2-4-201ENST00000523070 340 ntBASIC2.04□□□□□ -2.08
LINC00643Q86TS7 AC008033.2-201ENST00000542626 177 ntBASIC2.04□□□□□ -2.08
LINC00643Q86TS7 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC2.04□□□□□ -2.08
LINC00643Q86TS7 AADACP1-206ENST00000561502 1193 ntBASIC2.04□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 96.1 ms