Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC018467.1-202ENST00000432612 533 ntTSL 3 BASIC5.78□□□□□ -1.48
COL8A1P27658 AC011816.1-201ENST00000441346 546 ntBASIC5.78□□□□□ -1.48
COL8A1P27658 AL355488.1-201ENST00000449169 2611 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
COL8A1P27658 AL358612.1-201ENST00000452911 481 ntTSL 3 BASIC5.78□□□□□ -1.48
COL8A1P27658 PSMC1P13-201ENST00000458195 985 ntBASIC5.78□□□□□ -1.48
COL8A1P27658 RPS29P15-201ENST00000458329 171 ntBASIC5.78□□□□□ -1.48
COL8A1P27658 AL049714.1-201ENST00000466686 347 ntBASIC5.78□□□□□ -1.48
COL8A1P27658 RPL31P50-201ENST00000471002 296 ntBASIC5.78□□□□□ -1.48
COL8A1P27658 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC5.78□□□□□ -1.48
COL8A1P27658 LINC02025-201ENST00000488348 360 ntTSL 3 BASIC5.78□□□□□ -1.48
COL8A1P27658 DEFB109F-201ENST00000491870 277 ntBASIC5.78□□□□□ -1.48
COL8A1P27658 RN7SL187P-201ENST00000495587 303 ntBASIC5.78□□□□□ -1.48
COL8A1P27658 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC5.78□□□□□ -1.48
COL8A1P27658 RNU5B-3P-201ENST00000516601 115 ntBASIC5.78□□□□□ -1.48
COL8A1P27658 AC060775.1-201ENST00000518241 520 ntBASIC5.78□□□□□ -1.48
COL8A1P27658 AC090572.3-201ENST00000519041 804 ntTSL 3 BASIC5.78□□□□□ -1.48
COL8A1P27658 IGHV3-57-201ENST00000520143 280 ntBASIC5.78□□□□□ -1.48
COL8A1P27658 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC5.78□□□□□ -1.48
COL8A1P27658 MTND4P7-201ENST00000523876 130 ntBASIC5.78□□□□□ -1.48
COL8A1P27658 LGALS8-220ENST00000526634 1852 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
COL8A1P27658 AP000442.2-201ENST00000531108 440 ntTSL 3 BASIC5.78□□□□□ -1.48
COL8A1P27658 MDM2-233ENST00000545204 398 ntTSL 5 BASIC5.78□□□□□ -1.48
COL8A1P27658 AC090502.2-201ENST00000549267 280 ntBASIC5.78□□□□□ -1.48
COL8A1P27658 HSBP1P1-201ENST00000555205 166 ntBASIC5.78□□□□□ -1.48
COL8A1P27658 AL049779.3-201ENST00000557141 606 ntBASIC5.78□□□□□ -1.48
COL8A1P27658 AC018767.3-201ENST00000564185 481 ntTSL 3 BASIC5.78□□□□□ -1.48
COL8A1P27658 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC5.78□□□□□ -1.48
COL8A1P27658 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC5.78□□□□□ -1.48
COL8A1P27658 TTTY2-201ENST00000417072 3168 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
COL8A1P27658 TTTY2B-201ENST00000450591 3168 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
COL8A1P27658 RORA-201ENST00000261523 1951 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
COL8A1P27658 MITF-206ENST00000394351 1956 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL8A1P27658 MTCO1P7-201ENST00000419523 1542 ntBASIC5.78□□□□□ -1.48
COL8A1P27658 HABP2-203ENST00000542051 2972 ntAPPRIS ALT2 TSL 2 BASIC5.78□□□□□ -1.48
COL8A1P27658 RNF4-214ENST00000511600 4123 ntAPPRIS P1 TSL 2 BASIC5.78□□□□□ -1.48
COL8A1P27658 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC5.78□□□□□ -1.48
COL8A1P27658 ZNF699-201ENST00000308650 2094 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
COL8A1P27658 OR55B1P-203ENST00000641518 2602 ntBASIC5.78□□□□□ -1.48
COL8A1P27658 UTP4-204ENST00000563094 4183 ntTSL 2 BASIC5.77□□□□□ -1.48
COL8A1P27658 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.48
COL8A1P27658 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL8A1P27658 THUMPD3P1-201ENST00000506556 1480 ntBASIC5.77□□□□□ -1.49
COL8A1P27658 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC5.77□□□□□ -1.49
COL8A1P27658 OLFM4-201ENST00000219022 2897 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL8A1P27658 ZNF329-204ENST00000598312 3410 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL8A1P27658 HSPA8P11-201ENST00000508840 1898 ntBASIC5.77□□□□□ -1.49
COL8A1P27658 AC096564.2-201ENST00000512428 3147 ntTSL 5 BASIC5.77□□□□□ -1.49
COL8A1P27658 WDR93-204ENST00000558000 1886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL8A1P27658 KPNB1-203ENST00000540627 2989 ntTSL 2 BASIC5.77□□□□□ -1.49
COL8A1P27658 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL8A1P27658 RAI14-208ENST00000506376 3091 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL8A1P27658 SELE-201ENST00000333360 3857 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL8A1P27658 SMG1-210ENST00000565224 2372 ntTSL 5 BASIC5.77□□□□□ -1.49
COL8A1P27658 LARS-212ENST00000510191 3737 ntTSL 2 BASIC5.77□□□□□ -1.49
COL8A1P27658 LINC01559-201ENST00000318426 2750 ntTSL 2 BASIC5.77□□□□□ -1.49
COL8A1P27658 NPHP1-203ENST00000393272 2752 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL8A1P27658 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC5.77□□□□□ -1.49
COL8A1P27658 ABCB5-205ENST00000443026 2247 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL8A1P27658 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL8A1P27658 OR52E6-202ENST00000379946 954 ntBASIC5.77□□□□□ -1.49
COL8A1P27658 RNU6-338P-201ENST00000383888 105 ntBASIC5.77□□□□□ -1.49
COL8A1P27658 Y_RNA.416-201ENST00000384014 113 ntBASIC5.77□□□□□ -1.49
COL8A1P27658 RNU6-190P-201ENST00000384154 102 ntBASIC5.77□□□□□ -1.49
COL8A1P27658 MIR130B-202ENST00000385018 82 ntBASIC5.77□□□□□ -1.49
COL8A1P27658 UBE2V1P2-201ENST00000397758 440 ntBASIC5.77□□□□□ -1.49
COL8A1P27658 RNU6-1140P-201ENST00000410517 106 ntBASIC5.77□□□□□ -1.49
COL8A1P27658 RNA5SP498-201ENST00000411342 120 ntBASIC5.77□□□□□ -1.49
COL8A1P27658 GSTM3P2-201ENST00000412746 530 ntBASIC5.77□□□□□ -1.49
COL8A1P27658 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC5.77□□□□□ -1.49
COL8A1P27658 PRELID3BP11-201ENST00000414230 479 ntBASIC5.77□□□□□ -1.49
COL8A1P27658 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC5.77□□□□□ -1.49
COL8A1P27658 RBMY1KP-201ENST00000423480 476 ntBASIC5.77□□□□□ -1.49
COL8A1P27658 OR1M1-201ENST00000429566 1035 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
COL8A1P27658 KRTAP2-5P-201ENST00000446109 396 ntBASIC5.77□□□□□ -1.49
COL8A1P27658 AC020550.1-201ENST00000447385 163 ntBASIC5.77□□□□□ -1.49
COL8A1P27658 AL138752.1-201ENST00000452964 351 ntBASIC5.77□□□□□ -1.49
COL8A1P27658 AL021940.1-201ENST00000454271 677 ntTSL 2 BASIC5.77□□□□□ -1.49
COL8A1P27658 AC133473.1-201ENST00000455173 299 ntBASIC5.77□□□□□ -1.49
COL8A1P27658 AC023141.9-201ENST00000458734 412 ntBASIC5.77□□□□□ -1.49
COL8A1P27658 RNU7-182P-201ENST00000459009 62 ntBASIC5.77□□□□□ -1.49
COL8A1P27658 LINC01214-201ENST00000471222 335 ntTSL 5 BASIC5.77□□□□□ -1.49
COL8A1P27658 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC5.77□□□□□ -1.49
COL8A1P27658 AP001025.2-201ENST00000490908 477 ntBASIC5.77□□□□□ -1.49
COL8A1P27658 AL035404.1-201ENST00000497982 568 ntBASIC5.77□□□□□ -1.49
COL8A1P27658 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC5.77□□□□□ -1.49
COL8A1P27658 AC092436.1-201ENST00000506450 503 ntBASIC5.77□□□□□ -1.49
COL8A1P27658 AC116337.1-201ENST00000509680 687 ntBASIC5.77□□□□□ -1.49
COL8A1P27658 RN7SKP238-201ENST00000516483 249 ntBASIC5.77□□□□□ -1.49
COL8A1P27658 RNA5SP271-201ENST00000516700 88 ntBASIC5.77□□□□□ -1.49
COL8A1P27658 RNA5SP340-201ENST00000517132 107 ntBASIC5.77□□□□□ -1.49
COL8A1P27658 HIGD1AP6-201ENST00000521833 279 ntBASIC5.77□□□□□ -1.49
COL8A1P27658 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL8A1P27658 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL8A1P27658 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC5.77□□□□□ -1.49
COL8A1P27658 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC5.77□□□□□ -1.49
COL8A1P27658 AC007496.2-201ENST00000564801 547 ntTSL 4 BASIC5.77□□□□□ -1.49
COL8A1P27658 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC5.77□□□□□ -1.49
COL8A1P27658 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC5.77□□□□□ -1.49
COL8A1P27658 MIR548Y-201ENST00000582739 110 ntBASIC5.77□□□□□ -1.49
COL8A1P27658 AC008752.2-201ENST00000591174 750 ntTSL 3 BASIC5.77□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 110.6 ms