Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC4.18□□□□□ -1.74
COL5A3P25940 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC4.18□□□□□ -1.74
COL5A3P25940 NDUFB9P3-201ENST00000521269 501 ntBASIC4.18□□□□□ -1.74
COL5A3P25940 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC4.18□□□□□ -1.74
COL5A3P25940 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC4.18□□□□□ -1.74
COL5A3P25940 RDM1-219ENST00000615378 542 ntTSL 3 BASIC4.18□□□□□ -1.74
COL5A3P25940 AC018692.3-201ENST00000623929 123 ntBASIC4.18□□□□□ -1.74
COL5A3P25940 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL5A3P25940 AC004944.1-201ENST00000517807 3059 ntBASIC4.18□□□□□ -1.74
COL5A3P25940 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
COL5A3P25940 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.18□□□□□ -1.74
COL5A3P25940 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL5A3P25940 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
COL5A3P25940 HSP90AA4P-202ENST00000506915 2228 ntBASIC4.18□□□□□ -1.74
COL5A3P25940 AC006504.1-201ENST00000562493 3666 ntBASIC4.18□□□□□ -1.74
COL5A3P25940 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.18□□□□□ -1.74
COL5A3P25940 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL5A3P25940 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL5A3P25940 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC4.18□□□□□ -1.74
COL5A3P25940 HSPE1P8-201ENST00000406997 288 ntBASIC4.18□□□□□ -1.74
COL5A3P25940 COTL1P1-201ENST00000422309 375 ntBASIC4.18□□□□□ -1.74
COL5A3P25940 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC4.18□□□□□ -1.74
COL5A3P25940 AP000942.1-201ENST00000463969 747 ntBASIC4.18□□□□□ -1.74
COL5A3P25940 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC4.18□□□□□ -1.74
COL5A3P25940 AC091826.1-201ENST00000514065 313 ntBASIC4.18□□□□□ -1.74
COL5A3P25940 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC4.18□□□□□ -1.74
COL5A3P25940 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC4.18□□□□□ -1.74
COL5A3P25940 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC4.18□□□□□ -1.74
COL5A3P25940 PSMA2P1-201ENST00000526365 646 ntBASIC4.18□□□□□ -1.74
COL5A3P25940 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC4.18□□□□□ -1.74
COL5A3P25940 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC4.18□□□□□ -1.74
COL5A3P25940 OOSP1P2-201ENST00000579644 351 ntBASIC4.18□□□□□ -1.74
COL5A3P25940 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC4.18□□□□□ -1.74
COL5A3P25940 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC4.18□□□□□ -1.74
COL5A3P25940 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
COL5A3P25940 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL5A3P25940 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
COL5A3P25940 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL5A3P25940 AL513302.2-201ENST00000562313 1842 ntBASIC4.17□□□□□ -1.74
COL5A3P25940 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL5A3P25940 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL5A3P25940 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.17□□□□□ -1.74
COL5A3P25940 RNA5SP432-201ENST00000362480 116 ntBASIC4.17□□□□□ -1.74
COL5A3P25940 OR2X1P-201ENST00000421144 687 ntBASIC4.17□□□□□ -1.74
COL5A3P25940 ZDHHC20P2-201ENST00000424108 429 ntBASIC4.17□□□□□ -1.74
COL5A3P25940 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC4.17□□□□□ -1.74
COL5A3P25940 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC4.17□□□□□ -1.74
COL5A3P25940 AC069499.1-201ENST00000489433 509 ntBASIC4.17□□□□□ -1.74
COL5A3P25940 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC4.17□□□□□ -1.74
COL5A3P25940 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC4.17□□□□□ -1.74
COL5A3P25940 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC4.17□□□□□ -1.74
COL5A3P25940 AC073073.2-201ENST00000609827 2578 ntBASIC4.17□□□□□ -1.74
COL5A3P25940 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC4.17□□□□□ -1.74
COL5A3P25940 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL5A3P25940 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
COL5A3P25940 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC4.16□□□□□ -1.74
COL5A3P25940 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL5A3P25940 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL5A3P25940 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC4.16□□□□□ -1.74
COL5A3P25940 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
COL5A3P25940 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC4.16□□□□□ -1.74
COL5A3P25940 AC002075.2-201ENST00000425207 252 ntBASIC4.16□□□□□ -1.74
COL5A3P25940 RPS26P47-201ENST00000427219 348 ntBASIC4.16□□□□□ -1.74
COL5A3P25940 AC092447.2-201ENST00000435487 669 ntBASIC4.16□□□□□ -1.74
COL5A3P25940 AL356535.1-201ENST00000440335 398 ntBASIC4.16□□□□□ -1.74
COL5A3P25940 AC099560.2-201ENST00000457554 255 ntBASIC4.16□□□□□ -1.74
COL5A3P25940 RPS26P3-201ENST00000470205 348 ntBASIC4.16□□□□□ -1.74
COL5A3P25940 AC004057.1-201ENST00000485827 348 ntBASIC4.16□□□□□ -1.74
COL5A3P25940 SCARNA20.6-201ENST00000517251 106 ntBASIC4.16□□□□□ -1.74
COL5A3P25940 KCTD9P6-201ENST00000522306 950 ntBASIC4.16□□□□□ -1.74
COL5A3P25940 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC4.16□□□□□ -1.74
COL5A3P25940 AL139395.1-201ENST00000603662 160 ntBASIC4.16□□□□□ -1.74
COL5A3P25940 BMS1P21-201ENST00000634565 365 ntBASIC4.16□□□□□ -1.74
COL5A3P25940 LINC02471-203ENST00000641941 4752 ntBASIC4.16□□□□□ -1.74
COL5A3P25940 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
COL5A3P25940 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
COL5A3P25940 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.16□□□□□ -1.74
COL5A3P25940 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
COL5A3P25940 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC4.15□□□□□ -1.74
COL5A3P25940 UBE2V1P2-201ENST00000397758 440 ntBASIC4.15□□□□□ -1.74
COL5A3P25940 AL603766.1-201ENST00000407763 664 ntBASIC4.15□□□□□ -1.74
COL5A3P25940 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC4.15□□□□□ -1.74
COL5A3P25940 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC4.15□□□□□ -1.74
COL5A3P25940 SETP1-201ENST00000556014 845 ntBASIC4.15□□□□□ -1.74
COL5A3P25940 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC4.15□□□□□ -1.74
COL5A3P25940 AC074276.2-201ENST00000619891 348 ntBASIC4.15□□□□□ -1.74
COL5A3P25940 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC4.15□□□□□ -1.74
COL5A3P25940 CR383658.2-201ENST00000547576 1525 ntBASIC4.15□□□□□ -1.74
COL5A3P25940 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
COL5A3P25940 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.74
COL5A3P25940 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
COL5A3P25940 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC4.15□□□□□ -1.74
COL5A3P25940 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
COL5A3P25940 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
COL5A3P25940 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
COL5A3P25940 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.75
COL5A3P25940 NACAP7-201ENST00000407371 609 ntBASIC4.15□□□□□ -1.75
COL5A3P25940 NANOGP6-201ENST00000429190 847 ntBASIC4.15□□□□□ -1.75
COL5A3P25940 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC4.15□□□□□ -1.75
COL5A3P25940 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms