Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC022182.1-202ENST00000529234 580 ntTSL 2 BASIC7.06□□□□□ -1.28
COL9A1P20849 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC7.06□□□□□ -1.28
COL9A1P20849 ASB8-202ENST00000535055 657 ntTSL 2 BASIC7.06□□□□□ -1.28
COL9A1P20849 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC7.06□□□□□ -1.28
COL9A1P20849 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC7.06□□□□□ -1.28
COL9A1P20849 AC005341.1-201ENST00000571086 708 ntBASIC7.06□□□□□ -1.28
COL9A1P20849 SUMO2P15-201ENST00000604285 278 ntBASIC7.06□□□□□ -1.28
COL9A1P20849 IGKV2OR2-1-201ENST00000605129 304 ntBASIC7.06□□□□□ -1.28
COL9A1P20849 NANOGP3-201ENST00000605855 286 ntBASIC7.06□□□□□ -1.28
COL9A1P20849 AL049794.2-201ENST00000616301 365 ntBASIC7.06□□□□□ -1.28
COL9A1P20849 NCKAP5-204ENST00000409213 2390 ntAPPRIS ALT2 TSL 5 BASIC7.06□□□□□ -1.28
COL9A1P20849 ADAMTS9-AS2-202ENST00000474768 2388 ntTSL 2 BASIC7.06□□□□□ -1.28
COL9A1P20849 NLRP9-201ENST00000332836 3484 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL9A1P20849 ZNF451-204ENST00000370708 9478 ntTSL 2 BASIC7.06□□□□□ -1.28
COL9A1P20849 AC011525.1-201ENST00000562167 5676 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
COL9A1P20849 ADGRL3-209ENST00000508693 5009 ntTSL 5 BASIC7.06□□□□□ -1.28
COL9A1P20849 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL9A1P20849 FAM135A-207ENST00000457062 5282 ntAPPRIS P3 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL9A1P20849 ERBB3-221ENST00000553131 3237 ntTSL 2 BASIC7.06□□□□□ -1.28
COL9A1P20849 ZC3H8-202ENST00000409573 5965 ntAPPRIS P2 TSL 5 BASIC7.06□□□□□ -1.28
COL9A1P20849 PAIP1-202ENST00000338972 1814 ntAPPRIS P3 TSL 5 BASIC7.06□□□□□ -1.28
COL9A1P20849 FAM240A-201ENST00000444264 1826 ntAPPRIS P2 TSL 2 BASIC7.06□□□□□ -1.28
COL9A1P20849 FAM240A-202ENST00000640551 1826 ntAPPRIS ALT2 TSL 2 BASIC7.06□□□□□ -1.28
COL9A1P20849 NUP155-207ENST00000513532 4088 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
COL9A1P20849 ALPK1-201ENST00000177648 4537 ntAPPRIS P3 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL9A1P20849 NAT10-205ENST00000531159 3436 ntAPPRIS ALT2 TSL 2 BASIC7.05□□□□□ -1.28
COL9A1P20849 IKZF3-203ENST00000346872 9667 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL9A1P20849 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC7.05□□□□□ -1.28
COL9A1P20849 RBM11-201ENST00000400577 1934 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL9A1P20849 KARSP2-201ENST00000415696 1639 ntBASIC7.05□□□□□ -1.28
COL9A1P20849 ATXN2-214ENST00000535949 3205 ntAPPRIS ALT2 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL9A1P20849 ARHGAP20-203ENST00000527598 5998 ntAPPRIS ALT2 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL9A1P20849 GJC1-207ENST00000590758 7566 ntAPPRIS P1 TSL 3 BASIC7.05□□□□□ -1.28
COL9A1P20849 OR4Q3-202ENST00000642117 2165 ntAPPRIS P1 BASIC7.05□□□□□ -1.28
COL9A1P20849 TRIM66-202ENST00000402157 10086 ntAPPRIS P5 TSL 5 BASIC7.05□□□□□ -1.28
COL9A1P20849 CLEC9A-201ENST00000355819 1734 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL9A1P20849 PLCG2-201ENST00000359376 3819 ntTSL 5 BASIC7.05□□□□□ -1.28
COL9A1P20849 RNU6-188P-201ENST00000364207 107 ntBASIC7.05□□□□□ -1.28
COL9A1P20849 Y_RNA.237-201ENST00000364439 102 ntBASIC7.05□□□□□ -1.28
COL9A1P20849 SNORA70G-201ENST00000383923 142 ntBASIC7.05□□□□□ -1.28
COL9A1P20849 CHN2-208ENST00000412711 2991 ntTSL 2 BASIC7.05□□□□□ -1.28
COL9A1P20849 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC7.05□□□□□ -1.28
COL9A1P20849 KRTAP2-5P-201ENST00000446109 396 ntBASIC7.05□□□□□ -1.28
COL9A1P20849 AL031274.1-201ENST00000450334 232 ntBASIC7.05□□□□□ -1.28
COL9A1P20849 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC7.05□□□□□ -1.28
COL9A1P20849 RPL23AP31-201ENST00000456160 467 ntBASIC7.05□□□□□ -1.28
COL9A1P20849 AC096922.1-201ENST00000461635 651 ntBASIC7.05□□□□□ -1.28
COL9A1P20849 MTERF4-220ENST00000495694 909 ntTSL 5 BASIC7.05□□□□□ -1.28
COL9A1P20849 AC025458.1-201ENST00000506046 166 ntBASIC7.05□□□□□ -1.28
COL9A1P20849 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
COL9A1P20849 RNU6-1092P-201ENST00000516955 87 ntBASIC7.05□□□□□ -1.28
COL9A1P20849 AC060775.1-201ENST00000518241 520 ntBASIC7.05□□□□□ -1.28
COL9A1P20849 AC144568.1-201ENST00000520139 137 ntBASIC7.05□□□□□ -1.28
COL9A1P20849 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC7.05□□□□□ -1.28
COL9A1P20849 AP002392.1-201ENST00000537692 208 ntBASIC7.05□□□□□ -1.28
COL9A1P20849 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC7.05□□□□□ -1.28
COL9A1P20849 AC079905.1-201ENST00000549280 475 ntBASIC7.05□□□□□ -1.28
COL9A1P20849 GOLGA6L5P-203ENST00000559768 578 ntTSL 4 BASIC7.05□□□□□ -1.28
COL9A1P20849 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC7.05□□□□□ -1.28
COL9A1P20849 AC068418.1-201ENST00000582990 404 ntTSL 3 BASIC7.05□□□□□ -1.28
COL9A1P20849 AC008507.3-201ENST00000585753 472 ntBASIC7.05□□□□□ -1.28
COL9A1P20849 FAM27E4-201ENST00000605259 342 ntBASIC7.05□□□□□ -1.28
COL9A1P20849 AC002044.1-201ENST00000606707 158 ntBASIC7.05□□□□□ -1.28
COL9A1P20849 AL589743.6-201ENST00000611025 117 ntBASIC7.05□□□□□ -1.28
COL9A1P20849 AL138960.1-201ENST00000613838 513 ntBASIC7.05□□□□□ -1.28
COL9A1P20849 U1.41-201ENST00000617626 165 ntBASIC7.05□□□□□ -1.28
COL9A1P20849 PCBP1-AS1-359ENST00000630283 1063 ntTSL 5 BASIC7.05□□□□□ -1.28
COL9A1P20849 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC7.05□□□□□ -1.28
COL9A1P20849 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL9A1P20849 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
COL9A1P20849 OR2A42-202ENST00000641810 4946 ntAPPRIS P1 BASIC7.05□□□□□ -1.28
COL9A1P20849 CCR2-204ENST00000445132 2386 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL9A1P20849 AP005131.1-201ENST00000585366 4745 ntTSL 5 BASIC7.05□□□□□ -1.28
COL9A1P20849 POGZ-218ENST00000531094 4415 ntAPPRIS ALT1 TSL 2 BASIC7.05□□□□□ -1.28
COL9A1P20849 AL592148.3-201ENST00000608771 2646 ntBASIC7.05□□□□□ -1.28
COL9A1P20849 GPCPD1-201ENST00000379019 5489 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL9A1P20849 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
COL9A1P20849 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC7.05□□□□□ -1.28
COL9A1P20849 NUTM2B-AS1-212ENST00000610681 4241 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
COL9A1P20849 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC7.04□□□□□ -1.28
COL9A1P20849 FAM107A-202ENST00000394481 3465 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL9A1P20849 CYB5B-201ENST00000307892 4286 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
COL9A1P20849 ANAPC5-204ENST00000441917 2147 ntTSL 5 BASIC7.04□□□□□ -1.28
COL9A1P20849 ASB15-206ENST00000451558 4788 ntAPPRIS P1 TSL 5 BASIC7.04□□□□□ -1.28
COL9A1P20849 TAT-201ENST00000355962 3983 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL9A1P20849 USPL1-201ENST00000255304 3814 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL9A1P20849 SEMA6A-210ENST00000510263 3292 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL9A1P20849 PLXDC2-203ENST00000377252 12468 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL9A1P20849 AC092807.3-203ENST00000467530 2745 ntTSL 2 BASIC7.04□□□□□ -1.28
COL9A1P20849 BOLL-204ENST00000430004 2987 ntTSL 2 BASIC7.04□□□□□ -1.28
COL9A1P20849 LINC01492-201ENST00000411575 3738 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
COL9A1P20849 SPP1-202ENST00000360804 1196 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
COL9A1P20849 Y_RNA.54-201ENST00000362766 105 ntBASIC7.04□□□□□ -1.28
COL9A1P20849 RPL24P7-201ENST00000399435 453 ntBASIC7.04□□□□□ -1.28
COL9A1P20849 DBIP1-201ENST00000401435 260 ntBASIC7.04□□□□□ -1.28
COL9A1P20849 RNU2-20P-201ENST00000410425 191 ntBASIC7.04□□□□□ -1.28
COL9A1P20849 AC012462.2-201ENST00000414756 391 ntTSL 3 BASIC7.04□□□□□ -1.28
COL9A1P20849 MRPS21P5-201ENST00000417885 231 ntBASIC7.04□□□□□ -1.28
COL9A1P20849 RPL21P38-201ENST00000418090 167 ntBASIC7.04□□□□□ -1.28
COL9A1P20849 AL158071.1-201ENST00000430315 461 ntBASIC7.04□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 121.8 ms