Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 MIR4443-201ENST00000585052 53 ntBASIC3.73□□□□□ -1.81
SDC1P18827 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC3.73□□□□□ -1.81
SDC1P18827 NF1P5-201ENST00000588287 448 ntBASIC3.73□□□□□ -1.81
SDC1P18827 EIF1P6-201ENST00000600054 334 ntBASIC3.73□□□□□ -1.81
SDC1P18827 NTAN1P1-201ENST00000603150 646 ntBASIC3.73□□□□□ -1.81
SDC1P18827 AL390816.3-201ENST00000604527 1066 ntBASIC3.73□□□□□ -1.81
SDC1P18827 AC005014.3-201ENST00000605985 190 ntBASIC3.73□□□□□ -1.81
SDC1P18827 AC016542.1-201ENST00000608259 493 ntBASIC3.73□□□□□ -1.81
SDC1P18827 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
SDC1P18827 AP003400.6-201ENST00000624698 740 ntBASIC3.73□□□□□ -1.81
SDC1P18827 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
SDC1P18827 MIR7641-1-201ENST00000627518 61 ntBASIC3.73□□□□□ -1.81
SDC1P18827 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC3.73□□□□□ -1.81
SDC1P18827 AL590396.2-201ENST00000636511 1041 ntBASIC3.73□□□□□ -1.81
SDC1P18827 AC134882.1-201ENST00000603738 1676 ntBASIC3.73□□□□□ -1.81
SDC1P18827 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
SDC1P18827 CASC19-261ENST00000641853 1638 ntBASIC3.73□□□□□ -1.81
SDC1P18827 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
SDC1P18827 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
SDC1P18827 SLC2A3P1-201ENST00000519666 1451 ntBASIC3.73□□□□□ -1.81
SDC1P18827 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC3.73□□□□□ -1.81
SDC1P18827 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
SDC1P18827 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
SDC1P18827 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.72□□□□□ -1.81
SDC1P18827 AL627171.1-201ENST00000618845 1308 ntBASIC3.72□□□□□ -1.81
SDC1P18827 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.72□□□□□ -1.81
SDC1P18827 NCAPGP1-201ENST00000505112 1814 ntBASIC3.72□□□□□ -1.81
SDC1P18827 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
SDC1P18827 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
SDC1P18827 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.72□□□□□ -1.81
SDC1P18827 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
SDC1P18827 HMGN2P8-201ENST00000391458 268 ntBASIC3.72□□□□□ -1.81
SDC1P18827 AP002784.2-201ENST00000397300 549 ntBASIC3.72□□□□□ -1.81
SDC1P18827 RN7SKP56-201ENST00000410513 331 ntBASIC3.72□□□□□ -1.81
SDC1P18827 RNU4-6P-201ENST00000410804 122 ntBASIC3.72□□□□□ -1.81
SDC1P18827 AL138785.1-201ENST00000425821 331 ntBASIC3.72□□□□□ -1.81
SDC1P18827 AL691449.1-201ENST00000426570 421 ntBASIC3.72□□□□□ -1.81
SDC1P18827 IFNNP1-201ENST00000429219 553 ntBASIC3.72□□□□□ -1.81
SDC1P18827 ELOCP11-201ENST00000436690 332 ntBASIC3.72□□□□□ -1.81
SDC1P18827 AC092809.1-201ENST00000441469 474 ntBASIC3.72□□□□□ -1.81
SDC1P18827 ELOCP16-201ENST00000444494 332 ntBASIC3.72□□□□□ -1.81
SDC1P18827 GXYLT1P1-201ENST00000446657 490 ntBASIC3.72□□□□□ -1.81
SDC1P18827 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC3.72□□□□□ -1.81
SDC1P18827 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC3.72□□□□□ -1.81
SDC1P18827 GTF2IP12-201ENST00000456547 356 ntBASIC3.72□□□□□ -1.81
SDC1P18827 RPL21P18-201ENST00000469899 480 ntBASIC3.72□□□□□ -1.81
SDC1P18827 AC010683.1-201ENST00000473673 378 ntBASIC3.72□□□□□ -1.81
SDC1P18827 MTND6P6-201ENST00000478031 263 ntBASIC3.72□□□□□ -1.81
SDC1P18827 AC011037.1-201ENST00000483964 558 ntBASIC3.72□□□□□ -1.81
SDC1P18827 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC3.72□□□□□ -1.81
SDC1P18827 RPL30P11-201ENST00000495304 339 ntBASIC3.72□□□□□ -1.81
SDC1P18827 AC016550.1-201ENST00000505348 785 ntBASIC3.72□□□□□ -1.81
SDC1P18827 AC004069.2-201ENST00000505438 1114 ntBASIC3.72□□□□□ -1.81
SDC1P18827 AC008494.2-201ENST00000514544 370 ntBASIC3.72□□□□□ -1.81
SDC1P18827 AC112206.4-201ENST00000515142 405 ntBASIC3.72□□□□□ -1.81
SDC1P18827 AC112198.4-201ENST00000515450 351 ntBASIC3.72□□□□□ -1.81
SDC1P18827 RNU5A-7P-201ENST00000515979 116 ntBASIC3.72□□□□□ -1.81
SDC1P18827 AP003355.1-201ENST00000518956 587 ntBASIC3.72□□□□□ -1.81
SDC1P18827 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC3.72□□□□□ -1.81
SDC1P18827 MRPL49P2-201ENST00000521066 465 ntBASIC3.72□□□□□ -1.81
SDC1P18827 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC3.72□□□□□ -1.81
SDC1P18827 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC3.72□□□□□ -1.81
SDC1P18827 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC3.72□□□□□ -1.81
SDC1P18827 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC3.72□□□□□ -1.81
SDC1P18827 MIR4284-201ENST00000578924 81 ntBASIC3.72□□□□□ -1.81
SDC1P18827 MIR3939-201ENST00000582614 106 ntBASIC3.72□□□□□ -1.81
SDC1P18827 AC007448.1-201ENST00000582714 234 ntBASIC3.72□□□□□ -1.81
SDC1P18827 AC069366.1-201ENST00000583159 838 ntBASIC3.72□□□□□ -1.81
SDC1P18827 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC3.72□□□□□ -1.81
SDC1P18827 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC3.72□□□□□ -1.81
SDC1P18827 AC078880.5-201ENST00000617845 421 ntBASIC3.72□□□□□ -1.81
SDC1P18827 AL139089.1-201ENST00000620372 975 ntBASIC3.72□□□□□ -1.81
SDC1P18827 AP000943.4-201ENST00000622912 357 ntBASIC3.72□□□□□ -1.81
SDC1P18827 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC3.72□□□□□ -1.81
SDC1P18827 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
SDC1P18827 AC022031.1-201ENST00000585985 2593 ntBASIC3.72□□□□□ -1.81
SDC1P18827 AP002001.2-201ENST00000529025 1469 ntBASIC3.72□□□□□ -1.81
SDC1P18827 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.72□□□□□ -1.81
SDC1P18827 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
SDC1P18827 OR11H5P-202ENST00000641612 1325 ntBASIC3.71□□□□□ -1.81
SDC1P18827 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.71□□□□□ -1.81
SDC1P18827 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.81
SDC1P18827 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC3.71□□□□□ -1.82
SDC1P18827 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.82
SDC1P18827 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
SDC1P18827 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
SDC1P18827 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
SDC1P18827 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.71□□□□□ -1.82
SDC1P18827 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.71□□□□□ -1.82
SDC1P18827 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC3.71□□□□□ -1.82
SDC1P18827 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
SDC1P18827 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
SDC1P18827 HLFP1-201ENST00000402375 499 ntBASIC3.71□□□□□ -1.82
SDC1P18827 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC3.71□□□□□ -1.82
SDC1P18827 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC3.71□□□□□ -1.82
SDC1P18827 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.71□□□□□ -1.82
SDC1P18827 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC3.71□□□□□ -1.82
SDC1P18827 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC3.71□□□□□ -1.82
SDC1P18827 FABP5P3-201ENST00000437960 408 ntBASIC3.71□□□□□ -1.82
SDC1P18827 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC3.71□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 90.2 ms