Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 AC007529.1-201ENST00000418574 2178 ntBASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 AC092681.1-201ENST00000297369 291 ntBASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 RN7SKP162-201ENST00000363605 345 ntBASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 RNU6-533P-201ENST00000384144 107 ntBASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 RNU6-178P-201ENST00000384631 104 ntBASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 AL031679.1-201ENST00000400616 525 ntBASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 RN7SKP229-201ENST00000410465 302 ntBASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 RPSAP35-201ENST00000413753 818 ntBASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 NPM1P4-201ENST00000414095 812 ntBASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 HMGB3P23-201ENST00000414981 585 ntBASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 ISCA1P1-201ENST00000426679 387 ntBASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 RPS27AP6-201ENST00000427962 448 ntBASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 CYCSP12-201ENST00000437729 300 ntBASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 MTND5P14-201ENST00000441481 1267 ntBASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 RPL36AP15-201ENST00000444514 266 ntBASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 AC104563.1-201ENST00000476147 376 ntBASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 PDLIM1P4-201ENST00000504327 1006 ntBASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 MTND6P2-201ENST00000512226 524 ntBASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 SCARNA16.4-201ENST00000516956 187 ntBASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 AC022916.3-201ENST00000592961 742 ntBASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 BBIP1P1-201ENST00000602999 279 ntBASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 ACTR3BP1-201ENST00000605584 1247 ntBASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 AP001506.1-201ENST00000615444 211 ntBASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 U4.5-201ENST00000617137 123 ntBASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 AC093849.1-201ENST00000563631 2209 ntBASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 CASC19-221ENST00000641309 1382 ntBASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
TRIM39Q9HCM9 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 AL360270.2-201ENST00000562952 5985 ntBASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 AC107027.3-201ENST00000565095 3473 ntBASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 OR11H4-201ENST00000315409 1082 ntBASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 RNU6-809P-201ENST00000384461 107 ntBASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 AC016769.3-201ENST00000396562 315 ntBASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 ARF4P3-201ENST00000397387 509 ntBASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 NUP35P2-201ENST00000416748 943 ntBASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 AC073136.2-201ENST00000417282 849 ntBASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 AL513174.1-201ENST00000423182 629 ntBASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 NANOGP6-201ENST00000429190 847 ntBASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 RPL12P17-201ENST00000432393 498 ntBASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 GAPDHP14-201ENST00000450472 937 ntBASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 AL590365.1-201ENST00000450788 243 ntBASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 snoU13.7-201ENST00000459220 104 ntBASIC5.4□□□□□ -1.54
TRIM39Q9HCM9 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC5.4□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms