Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 OR5AN2P-201ENST00000534535 896 ntBASIC3.85□□□□□ -1.79
NKX3-1Q99801 LRRC34P1-201ENST00000542742 915 ntBASIC3.85□□□□□ -1.79
NKX3-1Q99801 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC3.85□□□□□ -1.79
NKX3-1Q99801 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
NKX3-1Q99801 OR4U1P-201ENST00000554958 912 ntBASIC3.85□□□□□ -1.79
NKX3-1Q99801 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC3.85□□□□□ -1.79
NKX3-1Q99801 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC3.85□□□□□ -1.79
NKX3-1Q99801 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC3.85□□□□□ -1.79
NKX3-1Q99801 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC3.85□□□□□ -1.79
NKX3-1Q99801 HNRNPCP4-201ENST00000571636 900 ntBASIC3.85□□□□□ -1.79
NKX3-1Q99801 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC3.85□□□□□ -1.79
NKX3-1Q99801 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC3.85□□□□□ -1.79
NKX3-1Q99801 AC008759.1-201ENST00000589783 983 ntBASIC3.85□□□□□ -1.79
NKX3-1Q99801 AC008687.2-201ENST00000597865 520 ntBASIC3.85□□□□□ -1.79
NKX3-1Q99801 AC107952.2-201ENST00000606048 486 ntBASIC3.85□□□□□ -1.79
NKX3-1Q99801 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC3.85□□□□□ -1.79
NKX3-1Q99801 AL445423.1-201ENST00000609941 536 ntBASIC3.85□□□□□ -1.79
NKX3-1Q99801 AC100847.1-201ENST00000611316 481 ntBASIC3.85□□□□□ -1.79
NKX3-1Q99801 MIR7154-201ENST00000620673 73 ntBASIC3.85□□□□□ -1.79
NKX3-1Q99801 AC011330.2-201ENST00000621680 635 ntBASIC3.85□□□□□ -1.79
NKX3-1Q99801 AC007546.2-201ENST00000623996 360 ntBASIC3.85□□□□□ -1.79
NKX3-1Q99801 GMFB-210ENST00000628554 639 ntTSL 4 BASIC3.85□□□□□ -1.79
NKX3-1Q99801 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC3.85□□□□□ -1.79
NKX3-1Q99801 AC087821.2-201ENST00000637086 450 ntBASIC3.85□□□□□ -1.79
NKX3-1Q99801 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC3.85□□□□□ -1.79
NKX3-1Q99801 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC3.85□□□□□ -1.79
NKX3-1Q99801 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
NKX3-1Q99801 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC3.85□□□□□ -1.79
NKX3-1Q99801 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
NKX3-1Q99801 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC3.85□□□□□ -1.79
NKX3-1Q99801 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
NKX3-1Q99801 AL049737.1-201ENST00000413920 1403 ntBASIC3.85□□□□□ -1.79
NKX3-1Q99801 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
NKX3-1Q99801 AL118496.1-201ENST00000440201 1812 ntBASIC3.84□□□□□ -1.79
NKX3-1Q99801 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC3.84□□□□□ -1.79
NKX3-1Q99801 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC3.84□□□□□ -1.79
NKX3-1Q99801 AL049555.1-201ENST00000562834 1933 ntBASIC3.84□□□□□ -1.79
NKX3-1Q99801 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC3.84□□□□□ -1.79
NKX3-1Q99801 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
NKX3-1Q99801 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
NKX3-1Q99801 RNU6-984P-201ENST00000363236 109 ntBASIC3.84□□□□□ -1.79
NKX3-1Q99801 RNA5SP505-201ENST00000364748 108 ntBASIC3.84□□□□□ -1.79
NKX3-1Q99801 RNA5SP22-201ENST00000365393 109 ntBASIC3.84□□□□□ -1.79
NKX3-1Q99801 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
NKX3-1Q99801 SNORA56-201ENST00000383966 129 ntBASIC3.84□□□□□ -1.79
NKX3-1Q99801 RNU6-398P-201ENST00000384143 109 ntBASIC3.84□□□□□ -1.79
NKX3-1Q99801 MIR513A2-201ENST00000385249 127 ntBASIC3.84□□□□□ -1.79
NKX3-1Q99801 MAST4-207ENST00000407621 559 ntTSL 2 BASIC3.84□□□□□ -1.79
NKX3-1Q99801 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
NKX3-1Q99801 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC3.84□□□□□ -1.79
NKX3-1Q99801 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC3.84□□□□□ -1.79
NKX3-1Q99801 RAD23BP1-201ENST00000421404 1227 ntBASIC3.84□□□□□ -1.79
NKX3-1Q99801 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC3.84□□□□□ -1.79
NKX3-1Q99801 XKRYP1-201ENST00000423438 492 ntBASIC3.84□□□□□ -1.79
NKX3-1Q99801 SKP1P3-201ENST00000429280 487 ntBASIC3.84□□□□□ -1.79
NKX3-1Q99801 ARL6IP1P2-201ENST00000431356 563 ntBASIC3.84□□□□□ -1.79
NKX3-1Q99801 XKRYP2-201ENST00000432915 492 ntBASIC3.84□□□□□ -1.79
NKX3-1Q99801 HLA-N-201ENST00000437516 135 ntBASIC3.84□□□□□ -1.79
NKX3-1Q99801 MTND1P26-201ENST00000440488 538 ntBASIC3.84□□□□□ -1.79
NKX3-1Q99801 AL357520.1-201ENST00000441557 453 ntBASIC3.84□□□□□ -1.79
NKX3-1Q99801 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC3.84□□□□□ -1.79
NKX3-1Q99801 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC3.84□□□□□ -1.79
NKX3-1Q99801 AL591719.1-201ENST00000444669 744 ntBASIC3.84□□□□□ -1.79
NKX3-1Q99801 ARL2BPP10-201ENST00000446487 531 ntBASIC3.84□□□□□ -1.79
NKX3-1Q99801 RPL7P59-201ENST00000447700 943 ntBASIC3.84□□□□□ -1.79
NKX3-1Q99801 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC3.84□□□□□ -1.79
NKX3-1Q99801 AC239809.1-201ENST00000450470 217 ntBASIC3.84□□□□□ -1.79
NKX3-1Q99801 DDX39BP2-208ENST00000453923 258 ntBASIC3.84□□□□□ -1.79
NKX3-1Q99801 RPS29P33-201ENST00000456717 146 ntBASIC3.84□□□□□ -1.79
NKX3-1Q99801 RPL12P20-201ENST00000475538 479 ntBASIC3.84□□□□□ -1.79
NKX3-1Q99801 RN7SL459P-201ENST00000481078 302 ntBASIC3.84□□□□□ -1.79
NKX3-1Q99801 GAPDHP39-201ENST00000481866 979 ntBASIC3.84□□□□□ -1.79
NKX3-1Q99801 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC3.84□□□□□ -1.79
NKX3-1Q99801 DYNLL1P6-201ENST00000503440 264 ntBASIC3.84□□□□□ -1.79
NKX3-1Q99801 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC3.84□□□□□ -1.79
NKX3-1Q99801 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC3.84□□□□□ -1.79
NKX3-1Q99801 CDV3-208ENST00000511392 554 ntTSL 5 BASIC3.84□□□□□ -1.79
NKX3-1Q99801 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC3.84□□□□□ -1.79
NKX3-1Q99801 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC3.84□□□□□ -1.79
NKX3-1Q99801 AP006289.1-201ENST00000538089 277 ntBASIC3.84□□□□□ -1.79
NKX3-1Q99801 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC3.84□□□□□ -1.79
NKX3-1Q99801 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC3.84□□□□□ -1.79
NKX3-1Q99801 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC3.84□□□□□ -1.79
NKX3-1Q99801 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC3.84□□□□□ -1.79
NKX3-1Q99801 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC3.84□□□□□ -1.79
NKX3-1Q99801 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC3.84□□□□□ -1.79
NKX3-1Q99801 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC3.84□□□□□ -1.79
NKX3-1Q99801 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC3.84□□□□□ -1.79
NKX3-1Q99801 AL121834.1-201ENST00000572284 509 ntBASIC3.84□□□□□ -1.79
NKX3-1Q99801 GAS5-AS1-201ENST00000602767 694 ntBASIC3.84□□□□□ -1.79
NKX3-1Q99801 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC3.84□□□□□ -1.79
NKX3-1Q99801 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC3.84□□□□□ -1.79
NKX3-1Q99801 AC091488.1-201ENST00000604239 660 ntBASIC3.84□□□□□ -1.79
NKX3-1Q99801 AL390816.3-201ENST00000604527 1066 ntBASIC3.84□□□□□ -1.79
NKX3-1Q99801 AC016877.3-201ENST00000606778 504 ntBASIC3.84□□□□□ -1.79
NKX3-1Q99801 AC024257.5-201ENST00000612739 531 ntBASIC3.84□□□□□ -1.79
NKX3-1Q99801 AC123768.4-201ENST00000616244 701 ntBASIC3.84□□□□□ -1.79
NKX3-1Q99801 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC3.84□□□□□ -1.79
NKX3-1Q99801 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
NKX3-1Q99801 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC3.84□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 113.3 ms