Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC4.02□□□□□ -1.77
VPS35Q96QK1 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
VPS35Q96QK1 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
VPS35Q96QK1 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC4.02□□□□□ -1.77
VPS35Q96QK1 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC4.02□□□□□ -1.77
VPS35Q96QK1 MTND4P10-201ENST00000446199 1363 ntBASIC4.02□□□□□ -1.77
VPS35Q96QK1 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
VPS35Q96QK1 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
VPS35Q96QK1 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
VPS35Q96QK1 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
VPS35Q96QK1 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
VPS35Q96QK1 AC097504.1-201ENST00000515103 2415 ntBASIC4.01□□□□□ -1.77
VPS35Q96QK1 RLIMP1-201ENST00000339626 1680 ntBASIC4.01□□□□□ -1.77
VPS35Q96QK1 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.01□□□□□ -1.77
VPS35Q96QK1 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
VPS35Q96QK1 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.01□□□□□ -1.77
VPS35Q96QK1 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC4.01□□□□□ -1.77
VPS35Q96QK1 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
VPS35Q96QK1 AC007685.1-201ENST00000329806 452 ntBASIC4.01□□□□□ -1.77
VPS35Q96QK1 SNORD35B-201ENST00000363660 87 ntBASIC4.01□□□□□ -1.77
VPS35Q96QK1 RN7SKP227-201ENST00000364445 330 ntBASIC4.01□□□□□ -1.77
VPS35Q96QK1 HMGB3P19-201ENST00000403971 560 ntBASIC4.01□□□□□ -1.77
VPS35Q96QK1 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC4.01□□□□□ -1.77
VPS35Q96QK1 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC4.01□□□□□ -1.77
VPS35Q96QK1 OR5BE1P-201ENST00000425977 939 ntBASIC4.01□□□□□ -1.77
VPS35Q96QK1 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC4.01□□□□□ -1.77
VPS35Q96QK1 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.01□□□□□ -1.77
VPS35Q96QK1 TRAPPC2P9-201ENST00000434556 343 ntBASIC4.01□□□□□ -1.77
VPS35Q96QK1 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC4.01□□□□□ -1.77
VPS35Q96QK1 RNFT1P2-201ENST00000443064 757 ntBASIC4.01□□□□□ -1.77
VPS35Q96QK1 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC4.01□□□□□ -1.77
VPS35Q96QK1 AC096992.1-201ENST00000459808 709 ntBASIC4.01□□□□□ -1.77
VPS35Q96QK1 AL132838.2-201ENST00000492041 314 ntBASIC4.01□□□□□ -1.77
VPS35Q96QK1 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC4.01□□□□□ -1.77
VPS35Q96QK1 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC4.01□□□□□ -1.77
VPS35Q96QK1 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC4.01□□□□□ -1.77
VPS35Q96QK1 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC4.01□□□□□ -1.77
VPS35Q96QK1 RN7SKP21-201ENST00000516503 220 ntBASIC4.01□□□□□ -1.77
VPS35Q96QK1 RGS5-218ENST00000526176 574 ntTSL 4 BASIC4.01□□□□□ -1.77
VPS35Q96QK1 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC4.01□□□□□ -1.77
VPS35Q96QK1 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC4.01□□□□□ -1.77
VPS35Q96QK1 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.01□□□□□ -1.77
VPS35Q96QK1 AC022968.1-201ENST00000567372 442 ntBASIC4.01□□□□□ -1.77
VPS35Q96QK1 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC4.01□□□□□ -1.77
VPS35Q96QK1 NTAN1P1-201ENST00000603150 646 ntBASIC4.01□□□□□ -1.77
VPS35Q96QK1 AL451044.1-201ENST00000604867 238 ntBASIC4.01□□□□□ -1.77
VPS35Q96QK1 ZYXP1-201ENST00000617638 118 ntBASIC4.01□□□□□ -1.77
VPS35Q96QK1 RNA5SP196-201ENST00000625967 102 ntBASIC4.01□□□□□ -1.77
VPS35Q96QK1 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC4.01□□□□□ -1.77
VPS35Q96QK1 OR5BE1P-202ENST00000641168 1176 ntBASIC4.01□□□□□ -1.77
VPS35Q96QK1 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC4.01□□□□□ -1.77
VPS35Q96QK1 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.01□□□□□ -1.77
VPS35Q96QK1 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4□□□□□ -1.77
VPS35Q96QK1 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC4□□□□□ -1.77
VPS35Q96QK1 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC4□□□□□ -1.77
VPS35Q96QK1 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
VPS35Q96QK1 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
VPS35Q96QK1 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
VPS35Q96QK1 AC090229.1-201ENST00000590983 1609 ntBASIC4□□□□□ -1.77
VPS35Q96QK1 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
VPS35Q96QK1 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC4□□□□□ -1.77
VPS35Q96QK1 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4□□□□□ -1.77
VPS35Q96QK1 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4□□□□□ -1.77
VPS35Q96QK1 SPRR2C-201ENST00000290702 219 ntBASIC4□□□□□ -1.77
VPS35Q96QK1 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
VPS35Q96QK1 XIAPP3-201ENST00000312918 795 ntBASIC4□□□□□ -1.77
VPS35Q96QK1 RPL21P65-201ENST00000406094 466 ntBASIC4□□□□□ -1.77
VPS35Q96QK1 HNRNPDP2-201ENST00000406475 478 ntBASIC4□□□□□ -1.77
VPS35Q96QK1 RNU2-65P-201ENST00000410162 185 ntBASIC4□□□□□ -1.77
VPS35Q96QK1 AL158825.1-201ENST00000414735 521 ntBASIC4□□□□□ -1.77
VPS35Q96QK1 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC4□□□□□ -1.77
VPS35Q96QK1 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC4□□□□□ -1.77
VPS35Q96QK1 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC4□□□□□ -1.77
VPS35Q96QK1 BMS1P19-201ENST00000433925 393 ntBASIC4□□□□□ -1.77
VPS35Q96QK1 AC023347.2-201ENST00000433994 462 ntBASIC4□□□□□ -1.77
VPS35Q96QK1 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC4□□□□□ -1.77
VPS35Q96QK1 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC4□□□□□ -1.77
VPS35Q96QK1 AC105402.2-201ENST00000438503 358 ntBASIC4□□□□□ -1.77
VPS35Q96QK1 RPS7P5-201ENST00000441482 581 ntBASIC4□□□□□ -1.77
VPS35Q96QK1 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC4□□□□□ -1.77
VPS35Q96QK1 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC4□□□□□ -1.77
VPS35Q96QK1 AC068587.1-201ENST00000483613 781 ntBASIC4□□□□□ -1.77
VPS35Q96QK1 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4□□□□□ -1.77
VPS35Q96QK1 USP9YP5-201ENST00000511770 630 ntBASIC4□□□□□ -1.77
VPS35Q96QK1 AC133963.2-201ENST00000513686 578 ntBASIC4□□□□□ -1.77
VPS35Q96QK1 RNU6-1102P-201ENST00000516149 96 ntBASIC4□□□□□ -1.77
VPS35Q96QK1 HMGB1P23-201ENST00000518743 568 ntBASIC4□□□□□ -1.77
VPS35Q96QK1 OR8K2P-201ENST00000524645 927 ntBASIC4□□□□□ -1.77
VPS35Q96QK1 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC4□□□□□ -1.77
VPS35Q96QK1 AC091516.1-201ENST00000549191 703 ntBASIC4□□□□□ -1.77
VPS35Q96QK1 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC4□□□□□ -1.77
VPS35Q96QK1 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC4□□□□□ -1.77
VPS35Q96QK1 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC4□□□□□ -1.77
VPS35Q96QK1 OR2BH1P-201ENST00000608850 864 ntBASIC4□□□□□ -1.77
VPS35Q96QK1 MIR6868-201ENST00000611215 58 ntBASIC4□□□□□ -1.77
VPS35Q96QK1 AC068831.8-201ENST00000620171 435 ntBASIC4□□□□□ -1.77
VPS35Q96QK1 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC4□□□□□ -1.77
VPS35Q96QK1 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
VPS35Q96QK1 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC4□□□□□ -1.77
VPS35Q96QK1 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC4□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms