Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC3.81□□□□□ -1.8
CCDC42Q96M95 MIR6875-201ENST00000617506 72 ntBASIC3.81□□□□□ -1.8
CCDC42Q96M95 AL357559.1-201ENST00000622228 274 ntBASIC3.81□□□□□ -1.8
CCDC42Q96M95 AP003355.3-201ENST00000623465 114 ntBASIC3.81□□□□□ -1.8
CCDC42Q96M95 AC110801.1-201ENST00000623590 212 ntBASIC3.81□□□□□ -1.8
CCDC42Q96M95 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC42Q96M95 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
CCDC42Q96M95 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC42Q96M95 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC42Q96M95 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
CCDC42Q96M95 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC42Q96M95 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC3.81□□□□□ -1.8
CCDC42Q96M95 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC42Q96M95 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC3.8□□□□□ -1.8
CCDC42Q96M95 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
CCDC42Q96M95 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC42Q96M95 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC42Q96M95 AP002088.1-201ENST00000382740 395 ntBASIC3.8□□□□□ -1.8
CCDC42Q96M95 PTMAP5-201ENST00000393073 333 ntBASIC3.8□□□□□ -1.8
CCDC42Q96M95 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC42Q96M95 MIR937-201ENST00000401271 86 ntBASIC3.8□□□□□ -1.8
CCDC42Q96M95 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC42Q96M95 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.8□□□□□ -1.8
CCDC42Q96M95 USP9YP31-201ENST00000431405 881 ntBASIC3.8□□□□□ -1.8
CCDC42Q96M95 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC3.8□□□□□ -1.8
CCDC42Q96M95 AC084149.2-201ENST00000438443 797 ntTSL 5 BASIC3.8□□□□□ -1.8
CCDC42Q96M95 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC42Q96M95 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC42Q96M95 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC42Q96M95 AC110768.1-201ENST00000509222 400 ntBASIC3.8□□□□□ -1.8
CCDC42Q96M95 HPRT1P1-201ENST00000509498 657 ntBASIC3.8□□□□□ -1.8
CCDC42Q96M95 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.8□□□□□ -1.8
CCDC42Q96M95 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC3.8□□□□□ -1.8
CCDC42Q96M95 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC42Q96M95 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC42Q96M95 AL389895.1-201ENST00000554127 252 ntBASIC3.8□□□□□ -1.8
CCDC42Q96M95 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC3.8□□□□□ -1.8
CCDC42Q96M95 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC3.8□□□□□ -1.8
CCDC42Q96M95 MIR4512-201ENST00000583257 77 ntBASIC3.8□□□□□ -1.8
CCDC42Q96M95 AC006254.3-201ENST00000603353 884 ntBASIC3.8□□□□□ -1.8
CCDC42Q96M95 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.8□□□□□ -1.8
CCDC42Q96M95 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.8□□□□□ -1.8
CCDC42Q96M95 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC42Q96M95 USP8P1-201ENST00000494673 3183 ntBASIC3.8□□□□□ -1.8
CCDC42Q96M95 AC090229.1-201ENST00000590983 1609 ntBASIC3.8□□□□□ -1.8
CCDC42Q96M95 MFSD8-236ENST00000641509 4050 ntBASIC3.8□□□□□ -1.8
CCDC42Q96M95 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC42Q96M95 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC42Q96M95 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.79□□□□□ -1.8
CCDC42Q96M95 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC42Q96M95 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
CCDC42Q96M95 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC42Q96M95 RPL32P3-201ENST00000359025 275 ntBASIC3.79□□□□□ -1.8
CCDC42Q96M95 RNU6-697P-201ENST00000363348 107 ntBASIC3.79□□□□□ -1.8
CCDC42Q96M95 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC42Q96M95 MT-TP-201ENST00000387461 68 ntBASIC3.79□□□□□ -1.8
CCDC42Q96M95 AL590704.1-201ENST00000402856 794 ntBASIC3.79□□□□□ -1.8
CCDC42Q96M95 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.79□□□□□ -1.8
CCDC42Q96M95 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
CCDC42Q96M95 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC42Q96M95 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.79□□□□□ -1.8
CCDC42Q96M95 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC42Q96M95 BX679664.1-201ENST00000434429 253 ntBASIC3.79□□□□□ -1.8
CCDC42Q96M95 TXNP1-201ENST00000441872 371 ntBASIC3.79□□□□□ -1.8
CCDC42Q96M95 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC42Q96M95 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC3.79□□□□□ -1.8
CCDC42Q96M95 CFTRP1-201ENST00000456646 183 ntBASIC3.79□□□□□ -1.8
CCDC42Q96M95 RPL23AP12-201ENST00000467573 473 ntBASIC3.79□□□□□ -1.8
CCDC42Q96M95 AC108471.1-201ENST00000513977 287 ntBASIC3.79□□□□□ -1.8
CCDC42Q96M95 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.79□□□□□ -1.8
CCDC42Q96M95 MTCO1P35-201ENST00000515270 228 ntBASIC3.79□□□□□ -1.8
CCDC42Q96M95 RN7SKP141-201ENST00000516167 338 ntBASIC3.79□□□□□ -1.8
CCDC42Q96M95 TBCA-206ENST00000518338 551 ntTSL 2 BASIC3.79□□□□□ -1.8
CCDC42Q96M95 AP001636.2-201ENST00000525517 696 ntBASIC3.79□□□□□ -1.8
CCDC42Q96M95 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC3.79□□□□□ -1.8
CCDC42Q96M95 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC42Q96M95 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.79□□□□□ -1.8
CCDC42Q96M95 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC42Q96M95 AC053481.4-201ENST00000583164 216 ntBASIC3.79□□□□□ -1.8
CCDC42Q96M95 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC42Q96M95 AC019131.2-201ENST00000609071 870 ntBASIC3.79□□□□□ -1.8
CCDC42Q96M95 AC016252.1-201ENST00000609721 474 ntBASIC3.79□□□□□ -1.8
CCDC42Q96M95 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC42Q96M95 AC069209.1-201ENST00000619282 651 ntBASIC3.79□□□□□ -1.8
CCDC42Q96M95 MIR6758-201ENST00000620653 63 ntBASIC3.79□□□□□ -1.8
CCDC42Q96M95 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC3.79□□□□□ -1.8
CCDC42Q96M95 RFC1-217ENST00000639695 867 ntTSL 5 BASIC3.79□□□□□ -1.8
CCDC42Q96M95 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC42Q96M95 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC42Q96M95 NMD3P1-201ENST00000439704 1488 ntBASIC3.79□□□□□ -1.8
CCDC42Q96M95 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC42Q96M95 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC42Q96M95 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC42Q96M95 MFSD8-220ENST00000641243 1422 ntBASIC3.78□□□□□ -1.8
CCDC42Q96M95 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC42Q96M95 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC42Q96M95 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC42Q96M95 MIR92A2-201ENST00000385299 75 ntBASIC3.78□□□□□ -1.8
CCDC42Q96M95 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
CCDC42Q96M95 RPL32P23-201ENST00000397237 405 ntBASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 118.3 ms