Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 IQCB2P-201ENST00000401788 1633 ntBASIC4.32□□□□□ -1.72
VMP1Q96GC9 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
VMP1Q96GC9 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC4.32□□□□□ -1.72
VMP1Q96GC9 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
VMP1Q96GC9 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
VMP1Q96GC9 USP8P1-201ENST00000494673 3183 ntBASIC4.32□□□□□ -1.72
VMP1Q96GC9 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.32□□□□□ -1.72
VMP1Q96GC9 SNORD74.4-201ENST00000364129 80 ntBASIC4.32□□□□□ -1.72
VMP1Q96GC9 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
VMP1Q96GC9 RNU6-354P-201ENST00000383862 107 ntBASIC4.32□□□□□ -1.72
VMP1Q96GC9 RNU6-610P-201ENST00000384264 107 ntBASIC4.32□□□□□ -1.72
VMP1Q96GC9 MIR16-1-201ENST00000385271 89 ntBASIC4.32□□□□□ -1.72
VMP1Q96GC9 MT-TC-201ENST00000387405 66 ntBASIC4.32□□□□□ -1.72
VMP1Q96GC9 AL121972.1-201ENST00000402023 252 ntBASIC4.32□□□□□ -1.72
VMP1Q96GC9 SFR1P1-201ENST00000403720 688 ntBASIC4.32□□□□□ -1.72
VMP1Q96GC9 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
VMP1Q96GC9 RNA5SP39-201ENST00000411245 120 ntBASIC4.32□□□□□ -1.72
VMP1Q96GC9 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC4.32□□□□□ -1.72
VMP1Q96GC9 AC069213.2-201ENST00000420238 366 ntBASIC4.32□□□□□ -1.72
VMP1Q96GC9 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC4.32□□□□□ -1.72
VMP1Q96GC9 HMGB3P5-201ENST00000428894 612 ntBASIC4.32□□□□□ -1.72
VMP1Q96GC9 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4.32□□□□□ -1.72
VMP1Q96GC9 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC4.32□□□□□ -1.72
VMP1Q96GC9 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC4.32□□□□□ -1.72
VMP1Q96GC9 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC4.32□□□□□ -1.72
VMP1Q96GC9 AL050341.1-201ENST00000447743 313 ntBASIC4.32□□□□□ -1.72
VMP1Q96GC9 AC108463.1-201ENST00000450258 347 ntBASIC4.32□□□□□ -1.72
VMP1Q96GC9 Z99714.1-201ENST00000450463 807 ntBASIC4.32□□□□□ -1.72
VMP1Q96GC9 SYPL1P1-201ENST00000473622 768 ntBASIC4.32□□□□□ -1.72
VMP1Q96GC9 MTND4LP2-201ENST00000502312 285 ntBASIC4.32□□□□□ -1.72
VMP1Q96GC9 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC4.32□□□□□ -1.72
VMP1Q96GC9 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC4.32□□□□□ -1.72
VMP1Q96GC9 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC4.32□□□□□ -1.72
VMP1Q96GC9 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
VMP1Q96GC9 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC4.32□□□□□ -1.72
VMP1Q96GC9 AP001207.1-201ENST00000524051 481 ntBASIC4.32□□□□□ -1.72
VMP1Q96GC9 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
VMP1Q96GC9 AC015911.5-201ENST00000587076 451 ntBASIC4.32□□□□□ -1.72
VMP1Q96GC9 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
VMP1Q96GC9 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC4.32□□□□□ -1.72
VMP1Q96GC9 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
VMP1Q96GC9 MIR7703-201ENST00000620784 77 ntBASIC4.32□□□□□ -1.72
VMP1Q96GC9 AP000346.3-201ENST00000622821 210 ntBASIC4.32□□□□□ -1.72
VMP1Q96GC9 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
VMP1Q96GC9 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
VMP1Q96GC9 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
VMP1Q96GC9 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.32□□□□□ -1.72
VMP1Q96GC9 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.31□□□□□ -1.72
VMP1Q96GC9 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.31□□□□□ -1.72
VMP1Q96GC9 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC4.31□□□□□ -1.72
VMP1Q96GC9 MFSD8-216ENST00000641147 4009 ntBASIC4.31□□□□□ -1.72
VMP1Q96GC9 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
VMP1Q96GC9 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VMP1Q96GC9 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
VMP1Q96GC9 RNU6-374P-201ENST00000364146 108 ntBASIC4.31□□□□□ -1.72
VMP1Q96GC9 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VMP1Q96GC9 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC4.31□□□□□ -1.72
VMP1Q96GC9 LIPT1P1-201ENST00000415870 1186 ntBASIC4.31□□□□□ -1.72
VMP1Q96GC9 OFD1P18Y-201ENST00000420889 959 ntBASIC4.31□□□□□ -1.72
VMP1Q96GC9 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC4.31□□□□□ -1.72
VMP1Q96GC9 CENPIP1-201ENST00000425713 902 ntBASIC4.31□□□□□ -1.72
VMP1Q96GC9 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
VMP1Q96GC9 LAMTOR3P1-201ENST00000428620 370 ntBASIC4.31□□□□□ -1.72
VMP1Q96GC9 AL512637.2-201ENST00000431287 1256 ntBASIC4.31□□□□□ -1.72
VMP1Q96GC9 B3GNT2P1-201ENST00000434960 952 ntBASIC4.31□□□□□ -1.72
VMP1Q96GC9 ARL2BPP10-201ENST00000446487 531 ntBASIC4.31□□□□□ -1.72
VMP1Q96GC9 AL451050.1-201ENST00000450126 415 ntBASIC4.31□□□□□ -1.72
VMP1Q96GC9 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC4.31□□□□□ -1.72
VMP1Q96GC9 RPL23AP62-201ENST00000463396 453 ntBASIC4.31□□□□□ -1.72
VMP1Q96GC9 RPL31P13-201ENST00000484151 370 ntBASIC4.31□□□□□ -1.72
VMP1Q96GC9 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC4.31□□□□□ -1.72
VMP1Q96GC9 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC4.31□□□□□ -1.72
VMP1Q96GC9 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC4.31□□□□□ -1.72
VMP1Q96GC9 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC4.31□□□□□ -1.72
VMP1Q96GC9 AL592156.1-201ENST00000508758 304 ntBASIC4.31□□□□□ -1.72
VMP1Q96GC9 AC015795.1-201ENST00000513669 327 ntBASIC4.31□□□□□ -1.72
VMP1Q96GC9 RN7SKP116-201ENST00000516902 319 ntBASIC4.31□□□□□ -1.72
VMP1Q96GC9 RN7SKP92-201ENST00000517266 244 ntBASIC4.31□□□□□ -1.72
VMP1Q96GC9 OR4A45P-201ENST00000529954 901 ntBASIC4.31□□□□□ -1.72
VMP1Q96GC9 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC4.31□□□□□ -1.72
VMP1Q96GC9 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC4.31□□□□□ -1.72
VMP1Q96GC9 MTCO1P40-201ENST00000574371 625 ntBASIC4.31□□□□□ -1.72
VMP1Q96GC9 AC013468.1-201ENST00000608680 598 ntBASIC4.31□□□□□ -1.72
VMP1Q96GC9 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC4.31□□□□□ -1.72
VMP1Q96GC9 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC4.31□□□□□ -1.72
VMP1Q96GC9 AC048347.1-201ENST00000624621 427 ntBASIC4.31□□□□□ -1.72
VMP1Q96GC9 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC4.31□□□□□ -1.72
VMP1Q96GC9 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC4.31□□□□□ -1.72
VMP1Q96GC9 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
VMP1Q96GC9 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VMP1Q96GC9 AF127577.6-201ENST00000623352 2191 ntBASIC4.31□□□□□ -1.72
VMP1Q96GC9 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VMP1Q96GC9 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC4.31□□□□□ -1.72
VMP1Q96GC9 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VMP1Q96GC9 ZNF734P-201ENST00000419494 1534 ntBASIC4.31□□□□□ -1.72
VMP1Q96GC9 AP001148.1-201ENST00000624124 2359 ntBASIC4.31□□□□□ -1.72
VMP1Q96GC9 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
VMP1Q96GC9 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
VMP1Q96GC9 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
VMP1Q96GC9 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.3□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 128.7 ms