Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC5.26□□□□□ -1.57
USP39Q53GS9 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
USP39Q53GS9 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC5.26□□□□□ -1.57
USP39Q53GS9 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC5.26□□□□□ -1.57
USP39Q53GS9 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC5.26□□□□□ -1.57
USP39Q53GS9 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC5.26□□□□□ -1.57
USP39Q53GS9 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
USP39Q53GS9 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
USP39Q53GS9 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
USP39Q53GS9 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC5.26□□□□□ -1.57
USP39Q53GS9 OR2AM1P-201ENST00000422137 422 ntBASIC5.26□□□□□ -1.57
USP39Q53GS9 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
USP39Q53GS9 GTF2IP23-201ENST00000423746 351 ntBASIC5.26□□□□□ -1.57
USP39Q53GS9 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC5.26□□□□□ -1.57
USP39Q53GS9 MTND1P28-201ENST00000435623 950 ntBASIC5.26□□□□□ -1.57
USP39Q53GS9 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC5.26□□□□□ -1.57
USP39Q53GS9 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC5.26□□□□□ -1.57
USP39Q53GS9 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC5.26□□□□□ -1.57
USP39Q53GS9 AL589765.3-201ENST00000446084 462 ntBASIC5.26□□□□□ -1.57
USP39Q53GS9 VN1R10P-201ENST00000447106 875 ntBASIC5.26□□□□□ -1.57
USP39Q53GS9 AC079776.3-201ENST00000450665 370 ntBASIC5.26□□□□□ -1.57
USP39Q53GS9 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC5.26□□□□□ -1.57
USP39Q53GS9 OR6C5P-201ENST00000452388 923 ntBASIC5.26□□□□□ -1.57
USP39Q53GS9 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC5.26□□□□□ -1.57
USP39Q53GS9 AC090602.1-201ENST00000469695 252 ntBASIC5.26□□□□□ -1.57
USP39Q53GS9 AC072039.1-201ENST00000477611 581 ntBASIC5.26□□□□□ -1.57
USP39Q53GS9 UBTFL6-201ENST00000477929 1024 ntBASIC5.26□□□□□ -1.57
USP39Q53GS9 AC058823.1-201ENST00000485315 474 ntBASIC5.26□□□□□ -1.57
USP39Q53GS9 AC079382.1-201ENST00000493346 557 ntBASIC5.26□□□□□ -1.57
USP39Q53GS9 RN7SL244P-201ENST00000493405 297 ntBASIC5.26□□□□□ -1.57
USP39Q53GS9 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC5.26□□□□□ -1.57
USP39Q53GS9 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC5.26□□□□□ -1.57
USP39Q53GS9 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC5.26□□□□□ -1.57
USP39Q53GS9 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC5.26□□□□□ -1.57
USP39Q53GS9 FTH1P11-201ENST00000517577 551 ntBASIC5.26□□□□□ -1.57
USP39Q53GS9 AC023632.1-201ENST00000518463 375 ntBASIC5.26□□□□□ -1.57
USP39Q53GS9 OR8L1P-201ENST00000534005 955 ntBASIC5.26□□□□□ -1.57
USP39Q53GS9 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC5.26□□□□□ -1.57
USP39Q53GS9 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC5.26□□□□□ -1.57
USP39Q53GS9 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC5.26□□□□□ -1.57
USP39Q53GS9 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC5.26□□□□□ -1.57
USP39Q53GS9 AL390334.1-201ENST00000556395 450 ntBASIC5.26□□□□□ -1.57
USP39Q53GS9 AC044913.1-201ENST00000557200 430 ntBASIC5.26□□□□□ -1.57
USP39Q53GS9 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC5.26□□□□□ -1.57
USP39Q53GS9 MIR4528-201ENST00000577763 90 ntBASIC5.26□□□□□ -1.57
USP39Q53GS9 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
USP39Q53GS9 AC108738.1-201ENST00000603703 237 ntBASIC5.26□□□□□ -1.57
USP39Q53GS9 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC5.26□□□□□ -1.57
USP39Q53GS9 AP000238.1-201ENST00000608759 426 ntBASIC5.26□□□□□ -1.57
USP39Q53GS9 AL161616.1-201ENST00000611867 286 ntBASIC5.26□□□□□ -1.57
USP39Q53GS9 AC010133.1-201ENST00000615809 842 ntBASIC5.26□□□□□ -1.57
USP39Q53GS9 AC009704.2-201ENST00000618739 483 ntBASIC5.26□□□□□ -1.57
USP39Q53GS9 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC5.26□□□□□ -1.57
USP39Q53GS9 AC087821.2-201ENST00000637086 450 ntBASIC5.26□□□□□ -1.57
USP39Q53GS9 ZNRD1ASP-221ENST00000637794 1074 ntBASIC5.26□□□□□ -1.57
USP39Q53GS9 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC5.26□□□□□ -1.57
USP39Q53GS9 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
USP39Q53GS9 ANKRD20A10P-201ENST00000457591 1515 ntBASIC5.26□□□□□ -1.57
USP39Q53GS9 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
USP39Q53GS9 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC5.26□□□□□ -1.57
USP39Q53GS9 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
USP39Q53GS9 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
USP39Q53GS9 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
USP39Q53GS9 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC5.26□□□□□ -1.57
USP39Q53GS9 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
USP39Q53GS9 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
USP39Q53GS9 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
USP39Q53GS9 AC005332.5-201ENST00000591222 2919 ntBASIC5.25□□□□□ -1.57
USP39Q53GS9 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
USP39Q53GS9 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC5.25□□□□□ -1.57
USP39Q53GS9 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
USP39Q53GS9 U3.3-201ENST00000362986 216 ntBASIC5.25□□□□□ -1.57
USP39Q53GS9 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC5.25□□□□□ -1.57
USP39Q53GS9 MIR181A1-201ENST00000385026 110 ntBASIC5.25□□□□□ -1.57
USP39Q53GS9 TAF9BP1-201ENST00000396646 746 ntBASIC5.25□□□□□ -1.57
USP39Q53GS9 DBIP1-201ENST00000401435 260 ntBASIC5.25□□□□□ -1.57
USP39Q53GS9 CHEK2P3-201ENST00000416118 248 ntBASIC5.25□□□□□ -1.57
USP39Q53GS9 AL590139.1-201ENST00000416267 400 ntBASIC5.25□□□□□ -1.57
USP39Q53GS9 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC5.25□□□□□ -1.57
USP39Q53GS9 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC5.25□□□□□ -1.57
USP39Q53GS9 AC007435.1-201ENST00000421086 415 ntBASIC5.25□□□□□ -1.57
USP39Q53GS9 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC5.25□□□□□ -1.57
USP39Q53GS9 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC5.25□□□□□ -1.57
USP39Q53GS9 AP000936.3-201ENST00000438127 255 ntBASIC5.25□□□□□ -1.57
USP39Q53GS9 RPS29P10-201ENST00000439197 166 ntBASIC5.25□□□□□ -1.57
USP39Q53GS9 ARL5AP2-201ENST00000444698 533 ntBASIC5.25□□□□□ -1.57
USP39Q53GS9 COX6CP12-201ENST00000446748 202 ntBASIC5.25□□□□□ -1.57
USP39Q53GS9 AL157827.1-201ENST00000447622 132 ntBASIC5.25□□□□□ -1.57
USP39Q53GS9 AC022431.1-201ENST00000450941 438 ntBASIC5.25□□□□□ -1.57
USP39Q53GS9 MTND3P10-201ENST00000450967 341 ntBASIC5.25□□□□□ -1.57
USP39Q53GS9 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC5.25□□□□□ -1.57
USP39Q53GS9 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC5.25□□□□□ -1.57
USP39Q53GS9 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC5.25□□□□□ -1.57
USP39Q53GS9 AC079168.1-201ENST00000458741 345 ntBASIC5.25□□□□□ -1.57
USP39Q53GS9 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC5.25□□□□□ -1.57
USP39Q53GS9 RN7SL591P-201ENST00000496150 292 ntBASIC5.25□□□□□ -1.57
USP39Q53GS9 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC5.25□□□□□ -1.57
USP39Q53GS9 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC5.25□□□□□ -1.57
USP39Q53GS9 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC5.25□□□□□ -1.57
USP39Q53GS9 AC109445.1-201ENST00000512356 383 ntBASIC5.25□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms