Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AL137845.2-201ENST00000444292 988 ntBASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 RPL23AP35-201ENST00000451906 501 ntBASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 DAP3-209ENST00000465375 729 ntTSL 2 BASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 AC072039.1-201ENST00000477611 581 ntBASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 RPL5P22-201ENST00000480199 884 ntBASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 BTF3P13-201ENST00000513224 490 ntBASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 RN7SKP96-201ENST00000516948 297 ntBASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 SLC2A13P1-201ENST00000531560 322 ntBASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 AC005868.1-201ENST00000536421 331 ntBASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 PCNPP1-201ENST00000552501 511 ntBASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 AL512347.1-201ENST00000566420 503 ntBASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 AC005084.1-201ENST00000605160 304 ntBASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 MIR6748-201ENST00000610433 71 ntBASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 CCL14-204ENST00000622526 472 ntTSL 3 BASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
PTCHD3Q3KNS1 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 DDX43P2-201ENST00000604753 1354 ntBASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 USP8-204ENST00000425032 3559 ntTSL 2 BASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 Y_RNA.505-201ENST00000384489 102 ntBASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 SNORA26.8-201ENST00000391306 124 ntBASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 CYCSP45-201ENST00000402289 315 ntBASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 MTCO3P31-201ENST00000405526 789 ntBASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 ZNF736P2Y-201ENST00000416040 1279 ntBASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 AF186996.5-201ENST00000418098 904 ntBASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 AC009965.2-201ENST00000425328 970 ntBASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 RPL37P1-201ENST00000432310 284 ntBASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 USP9YP10-201ENST00000454868 628 ntBASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 GYG1P1-201ENST00000460864 698 ntBASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 AC112206.1-201ENST00000468416 477 ntBASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 RPL7P16-201ENST00000479738 738 ntBASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 AC109486.1-201ENST00000486833 374 ntBASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 RPL7L1P13-201ENST00000511702 739 ntBASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 USP9YP5-201ENST00000511770 630 ntBASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 CDH12P4-201ENST00000517835 295 ntBASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 CDH12P3-201ENST00000517935 295 ntBASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 CDH12P1-201ENST00000518435 295 ntBASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 AC021006.3-201ENST00000530771 192 ntBASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 AC008033.2-201ENST00000542626 177 ntBASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 AC004987.4-201ENST00000603383 338 ntBASIC4.8□□□□□ -1.64
PTCHD3Q3KNS1 AL031320.1-201ENST00000604177 357 ntBASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms