Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
RNF4P78317 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC5.51□□□□□ -1.53
RNF4P78317 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
RNF4P78317 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
RNF4P78317 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
RNF4P78317 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
RNF4P78317 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
RNF4P78317 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
RNF4P78317 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
RNF4P78317 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
RNF4P78317 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
RNF4P78317 Y_RNA.460-201ENST00000384255 102 ntBASIC5.51□□□□□ -1.53
RNF4P78317 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
RNF4P78317 Z97832.1-201ENST00000402490 328 ntBASIC5.51□□□□□ -1.53
RNF4P78317 AL133384.1-201ENST00000412744 351 ntBASIC5.51□□□□□ -1.53
RNF4P78317 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC5.51□□□□□ -1.53
RNF4P78317 RPL36AP36-201ENST00000418616 301 ntBASIC5.51□□□□□ -1.53
RNF4P78317 AC013429.2-201ENST00000418798 781 ntBASIC5.51□□□□□ -1.53
RNF4P78317 PDCL2P1-201ENST00000419302 352 ntBASIC5.51□□□□□ -1.53
RNF4P78317 AC007283.2-201ENST00000424739 197 ntBASIC5.51□□□□□ -1.53
RNF4P78317 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC5.51□□□□□ -1.53
RNF4P78317 AL606489.2-201ENST00000433886 234 ntBASIC5.51□□□□□ -1.53
RNF4P78317 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC5.51□□□□□ -1.53
RNF4P78317 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC5.51□□□□□ -1.53
RNF4P78317 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC5.51□□□□□ -1.53
RNF4P78317 EIF4A1P6-201ENST00000448133 1210 ntBASIC5.51□□□□□ -1.53
RNF4P78317 AC005297.2-201ENST00000450430 606 ntBASIC5.51□□□□□ -1.53
RNF4P78317 GAPDHP14-201ENST00000450472 937 ntBASIC5.51□□□□□ -1.53
RNF4P78317 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC5.51□□□□□ -1.53
RNF4P78317 AC022431.1-201ENST00000450941 438 ntBASIC5.51□□□□□ -1.53
RNF4P78317 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC5.51□□□□□ -1.53
RNF4P78317 AC068631.1-205ENST00000455926 409 ntTSL 3 BASIC5.51□□□□□ -1.53
RNF4P78317 RNU6-1218P-201ENST00000458990 108 ntBASIC5.51□□□□□ -1.53
RNF4P78317 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC5.51□□□□□ -1.53
RNF4P78317 RPL21P6-201ENST00000479171 504 ntBASIC5.51□□□□□ -1.53
RNF4P78317 AC034222.1-201ENST00000494052 532 ntBASIC5.51□□□□□ -1.53
RNF4P78317 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC5.51□□□□□ -1.53
RNF4P78317 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC5.51□□□□□ -1.53
RNF4P78317 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC5.51□□□□□ -1.53
RNF4P78317 HMGN1P13-201ENST00000505795 138 ntBASIC5.51□□□□□ -1.53
RNF4P78317 AC010587.1-201ENST00000505809 469 ntBASIC5.51□□□□□ -1.53
RNF4P78317 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC5.51□□□□□ -1.53
RNF4P78317 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC5.51□□□□□ -1.53
RNF4P78317 AC114781.3-201ENST00000512083 142 ntBASIC5.51□□□□□ -1.53
RNF4P78317 MTND6P2-201ENST00000512226 524 ntBASIC5.51□□□□□ -1.53
RNF4P78317 AC018797.3-201ENST00000513388 1241 ntBASIC5.51□□□□□ -1.53
RNF4P78317 RNA5SP271-201ENST00000516700 88 ntBASIC5.51□□□□□ -1.53
RNF4P78317 RNU6-835P-201ENST00000516974 104 ntBASIC5.51□□□□□ -1.53
RNF4P78317 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.51□□□□□ -1.53
RNF4P78317 PCNAP4-201ENST00000532690 730 ntBASIC5.51□□□□□ -1.53
RNF4P78317 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC5.51□□□□□ -1.53
RNF4P78317 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
RNF4P78317 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC5.51□□□□□ -1.53
RNF4P78317 AP000763.3-201ENST00000542598 334 ntTSL 5 BASIC5.51□□□□□ -1.53
RNF4P78317 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC5.51□□□□□ -1.53
RNF4P78317 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC5.51□□□□□ -1.53
RNF4P78317 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC5.51□□□□□ -1.53
RNF4P78317 AL109766.1-201ENST00000555080 552 ntBASIC5.51□□□□□ -1.53
RNF4P78317 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC5.51□□□□□ -1.53
RNF4P78317 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC5.51□□□□□ -1.53
RNF4P78317 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC5.51□□□□□ -1.53
RNF4P78317 MIR4675-201ENST00000577898 77 ntBASIC5.51□□□□□ -1.53
RNF4P78317 MIR3167-201ENST00000579623 85 ntBASIC5.51□□□□□ -1.53
RNF4P78317 AC015917.1-201ENST00000579654 510 ntBASIC5.51□□□□□ -1.53
RNF4P78317 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC5.51□□□□□ -1.53
RNF4P78317 AC006363.1-201ENST00000603806 463 ntBASIC5.51□□□□□ -1.53
RNF4P78317 AC008966.2-201ENST00000606157 453 ntBASIC5.51□□□□□ -1.53
RNF4P78317 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC5.51□□□□□ -1.53
RNF4P78317 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC5.51□□□□□ -1.53
RNF4P78317 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC5.51□□□□□ -1.53
RNF4P78317 AC091953.2-201ENST00000623979 160 ntBASIC5.51□□□□□ -1.53
RNF4P78317 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC5.51□□□□□ -1.53
RNF4P78317 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC5.51□□□□□ -1.53
RNF4P78317 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
RNF4P78317 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC5.51□□□□□ -1.53
RNF4P78317 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
RNF4P78317 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC5.51□□□□□ -1.53
RNF4P78317 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC5.51□□□□□ -1.53
RNF4P78317 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC5.51□□□□□ -1.53
RNF4P78317 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
RNF4P78317 MAPK10-338ENST00000641647 3362 ntBASIC5.51□□□□□ -1.53
RNF4P78317 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
RNF4P78317 SELE-204ENST00000367776 3576 ntTSL 5 BASIC5.51□□□□□ -1.53
RNF4P78317 SELE-205ENST00000367777 3576 ntTSL 5 BASIC5.51□□□□□ -1.53
RNF4P78317 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC5.51□□□□□ -1.53
RNF4P78317 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
RNF4P78317 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
RNF4P78317 AC097504.1-201ENST00000515103 2415 ntBASIC5.5□□□□□ -1.53
RNF4P78317 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
RNF4P78317 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
RNF4P78317 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC5.5□□□□□ -1.53
RNF4P78317 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
RNF4P78317 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC5.5□□□□□ -1.53
RNF4P78317 CKAP2P1-201ENST00000555477 2049 ntBASIC5.5□□□□□ -1.53
RNF4P78317 PARP4P2-201ENST00000446672 3326 ntBASIC5.5□□□□□ -1.53
RNF4P78317 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
RNF4P78317 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
RNF4P78317 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
RNF4P78317 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
RNF4P78317 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC5.5□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms