Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 USP9YP31-201ENST00000431405 881 ntBASIC4.22□□□□□ -1.73
COL5A3P25940 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC4.22□□□□□ -1.73
COL5A3P25940 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC4.22□□□□□ -1.73
COL5A3P25940 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC4.22□□□□□ -1.73
COL5A3P25940 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC4.22□□□□□ -1.73
COL5A3P25940 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC4.22□□□□□ -1.73
COL5A3P25940 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC4.22□□□□□ -1.73
COL5A3P25940 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
COL5A3P25940 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC4.22□□□□□ -1.73
COL5A3P25940 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
COL5A3P25940 HSPA8P17-201ENST00000427029 1382 ntBASIC4.22□□□□□ -1.73
COL5A3P25940 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC4.22□□□□□ -1.73
COL5A3P25940 BTBD10P1-201ENST00000549824 1352 ntBASIC4.22□□□□□ -1.73
COL5A3P25940 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.73
COL5A3P25940 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
COL5A3P25940 SNORA7.4-201ENST00000384249 137 ntBASIC4.21□□□□□ -1.73
COL5A3P25940 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.73
COL5A3P25940 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC4.21□□□□□ -1.73
COL5A3P25940 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC4.21□□□□□ -1.73
COL5A3P25940 MTND6P5-201ENST00000448266 512 ntBASIC4.21□□□□□ -1.73
COL5A3P25940 SEC22A-207ENST00000481965 673 ntTSL 3 BASIC4.21□□□□□ -1.73
COL5A3P25940 AC026333.2-201ENST00000542164 106 ntBASIC4.21□□□□□ -1.73
COL5A3P25940 AC087888.1-201ENST00000550884 1254 ntBASIC4.21□□□□□ -1.73
COL5A3P25940 AP005262.1-201ENST00000582646 997 ntBASIC4.21□□□□□ -1.73
COL5A3P25940 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
COL5A3P25940 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
COL5A3P25940 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
COL5A3P25940 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
COL5A3P25940 CROT-204ENST00000442291 1993 ntTSL 5 BASIC4.21□□□□□ -1.74
COL5A3P25940 AF117829.1-206ENST00000621883 3802 ntBASIC4.21□□□□□ -1.74
COL5A3P25940 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
COL5A3P25940 ANKRD36P1-201ENST00000344424 659 ntBASIC4.21□□□□□ -1.74
COL5A3P25940 AL024507.1-201ENST00000412741 274 ntBASIC4.21□□□□□ -1.74
COL5A3P25940 JKAMPP1-201ENST00000413804 919 ntBASIC4.21□□□□□ -1.74
COL5A3P25940 AL353678.1-201ENST00000422735 741 ntBASIC4.21□□□□□ -1.74
COL5A3P25940 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
COL5A3P25940 AC008065.1-201ENST00000428525 348 ntBASIC4.21□□□□□ -1.74
COL5A3P25940 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
COL5A3P25940 HMGB3P14-201ENST00000494195 599 ntBASIC4.21□□□□□ -1.74
COL5A3P25940 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC4.21□□□□□ -1.74
COL5A3P25940 AC113192.3-201ENST00000529152 742 ntBASIC4.21□□□□□ -1.74
COL5A3P25940 AC006518.1-201ENST00000541449 943 ntBASIC4.21□□□□□ -1.74
COL5A3P25940 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC4.21□□□□□ -1.74
COL5A3P25940 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC4.21□□□□□ -1.74
COL5A3P25940 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC4.21□□□□□ -1.74
COL5A3P25940 AL158062.1-201ENST00000619632 745 ntBASIC4.21□□□□□ -1.74
COL5A3P25940 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
COL5A3P25940 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
COL5A3P25940 AC068647.1-201ENST00000489539 2265 ntBASIC4.2□□□□□ -1.74
COL5A3P25940 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC4.2□□□□□ -1.74
COL5A3P25940 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL5A3P25940 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
COL5A3P25940 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC4.2□□□□□ -1.74
COL5A3P25940 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC4.2□□□□□ -1.74
COL5A3P25940 AC006989.1-201ENST00000427212 131 ntBASIC4.2□□□□□ -1.74
COL5A3P25940 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC4.2□□□□□ -1.74
COL5A3P25940 RPL21P8-201ENST00000465083 535 ntBASIC4.2□□□□□ -1.74
COL5A3P25940 RPS29P26-201ENST00000477483 171 ntBASIC4.2□□□□□ -1.74
COL5A3P25940 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC4.2□□□□□ -1.74
COL5A3P25940 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.2□□□□□ -1.74
COL5A3P25940 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC4.2□□□□□ -1.74
COL5A3P25940 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.2□□□□□ -1.74
COL5A3P25940 AC006557.5-201ENST00000603126 811 ntBASIC4.2□□□□□ -1.74
COL5A3P25940 AC006023.1-201ENST00000603944 259 ntBASIC4.2□□□□□ -1.74
COL5A3P25940 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC4.2□□□□□ -1.74
COL5A3P25940 AL157817.1-201ENST00000614264 790 ntBASIC4.2□□□□□ -1.74
COL5A3P25940 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL5A3P25940 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC4.2□□□□□ -1.74
COL5A3P25940 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC4.2□□□□□ -1.74
COL5A3P25940 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL5A3P25940 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC4.2□□□□□ -1.74
COL5A3P25940 AL645568.2-201ENST00000432815 1337 ntBASIC4.2□□□□□ -1.74
COL5A3P25940 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL5A3P25940 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL5A3P25940 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL5A3P25940 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL5A3P25940 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL5A3P25940 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
COL5A3P25940 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC4.19□□□□□ -1.74
COL5A3P25940 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC4.19□□□□□ -1.74
COL5A3P25940 AC005229.2-201ENST00000456995 399 ntBASIC4.19□□□□□ -1.74
COL5A3P25940 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC4.19□□□□□ -1.74
COL5A3P25940 MIR2682-201ENST00000580305 110 ntBASIC4.19□□□□□ -1.74
COL5A3P25940 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC4.19□□□□□ -1.74
COL5A3P25940 AC005242.1-201ENST00000585658 438 ntBASIC4.19□□□□□ -1.74
COL5A3P25940 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC4.19□□□□□ -1.74
COL5A3P25940 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC4.19□□□□□ -1.74
COL5A3P25940 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.19□□□□□ -1.74
COL5A3P25940 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
COL5A3P25940 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.19□□□□□ -1.74
COL5A3P25940 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC4.19□□□□□ -1.74
COL5A3P25940 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC4.19□□□□□ -1.74
COL5A3P25940 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.19□□□□□ -1.74
COL5A3P25940 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL5A3P25940 AC062016.1-201ENST00000355719 319 ntBASIC4.18□□□□□ -1.74
COL5A3P25940 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL5A3P25940 MTND4LP20-201ENST00000402379 270 ntBASIC4.18□□□□□ -1.74
COL5A3P25940 RNA5SP80-201ENST00000410475 111 ntBASIC4.18□□□□□ -1.74
COL5A3P25940 AL513175.1-201ENST00000431492 780 ntBASIC4.18□□□□□ -1.74
COL5A3P25940 FCF1P3-201ENST00000496394 590 ntBASIC4.18□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 111.3 ms