Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC4.69□□□□□ -1.66
HOXA3O43365 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
HOXA3O43365 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
HOXA3O43365 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
HOXA3O43365 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC4.69□□□□□ -1.66
HOXA3O43365 NSF-206ENST00000575068 2667 ntTSL 2 BASIC4.69□□□□□ -1.66
HOXA3O43365 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC4.68□□□□□ -1.66
HOXA3O43365 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
HOXA3O43365 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
HOXA3O43365 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
HOXA3O43365 AC025574.1-201ENST00000554784 1653 ntBASIC4.68□□□□□ -1.66
HOXA3O43365 THAP12P9-201ENST00000503971 2360 ntBASIC4.68□□□□□ -1.66
HOXA3O43365 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
HOXA3O43365 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC4.68□□□□□ -1.66
HOXA3O43365 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
HOXA3O43365 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.68□□□□□ -1.66
HOXA3O43365 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC4.68□□□□□ -1.66
HOXA3O43365 SNORA64.1-201ENST00000362600 132 ntBASIC4.68□□□□□ -1.66
HOXA3O43365 RNA5SP132-201ENST00000364725 118 ntBASIC4.68□□□□□ -1.66
HOXA3O43365 RNA5SP211-201ENST00000365516 117 ntBASIC4.68□□□□□ -1.66
HOXA3O43365 RPL7P25-201ENST00000404151 721 ntBASIC4.68□□□□□ -1.66
HOXA3O43365 MIR1178-201ENST00000408396 91 ntBASIC4.68□□□□□ -1.66
HOXA3O43365 RN7SKP151-201ENST00000410230 316 ntBASIC4.68□□□□□ -1.66
HOXA3O43365 EEF1A1P29-201ENST00000416082 1096 ntBASIC4.68□□□□□ -1.66
HOXA3O43365 Z93019.1-201ENST00000416450 973 ntBASIC4.68□□□□□ -1.66
HOXA3O43365 RPL21P111-201ENST00000418453 477 ntBASIC4.68□□□□□ -1.66
HOXA3O43365 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC4.68□□□□□ -1.66
HOXA3O43365 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
HOXA3O43365 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXA3O43365 AC007562.1-201ENST00000421819 517 ntBASIC4.68□□□□□ -1.66
HOXA3O43365 RPL7P57-201ENST00000423238 740 ntBASIC4.68□□□□□ -1.66
HOXA3O43365 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXA3O43365 BRWD1P3-201ENST00000428816 390 ntBASIC4.68□□□□□ -1.66
HOXA3O43365 AC133104.1-201ENST00000429100 218 ntBASIC4.68□□□□□ -1.66
HOXA3O43365 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXA3O43365 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC4.68□□□□□ -1.66
HOXA3O43365 AC023274.2-201ENST00000445264 521 ntBASIC4.68□□□□□ -1.66
HOXA3O43365 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXA3O43365 EIF4A1P6-201ENST00000448133 1210 ntBASIC4.68□□□□□ -1.66
HOXA3O43365 LINC01952-202ENST00000450016 281 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXA3O43365 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXA3O43365 AL354710.1-201ENST00000453641 246 ntBASIC4.68□□□□□ -1.66
HOXA3O43365 MTND1P12-201ENST00000455231 147 ntBASIC4.68□□□□□ -1.66
HOXA3O43365 PFN1P6-201ENST00000476786 399 ntBASIC4.68□□□□□ -1.66
HOXA3O43365 SIAH1P1-201ENST00000479411 923 ntBASIC4.68□□□□□ -1.66
HOXA3O43365 RPS29P25-201ENST00000481709 171 ntBASIC4.68□□□□□ -1.66
HOXA3O43365 RPSAP51-201ENST00000497462 645 ntBASIC4.68□□□□□ -1.66
HOXA3O43365 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXA3O43365 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXA3O43365 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC4.68□□□□□ -1.66
HOXA3O43365 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC4.68□□□□□ -1.66
HOXA3O43365 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC4.68□□□□□ -1.66
HOXA3O43365 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
HOXA3O43365 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXA3O43365 RNU6-445P-201ENST00000516949 107 ntBASIC4.68□□□□□ -1.66
HOXA3O43365 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC4.68□□□□□ -1.66
HOXA3O43365 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXA3O43365 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXA3O43365 AP003034.1-201ENST00000534621 422 ntBASIC4.68□□□□□ -1.66
HOXA3O43365 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXA3O43365 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
HOXA3O43365 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC4.68□□□□□ -1.66
HOXA3O43365 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC4.68□□□□□ -1.66
HOXA3O43365 RPL12P25-202ENST00000598100 674 ntBASIC4.68□□□□□ -1.66
HOXA3O43365 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC4.68□□□□□ -1.66
HOXA3O43365 AL117336.2-201ENST00000602435 335 ntBASIC4.68□□□□□ -1.66
HOXA3O43365 AC073091.2-201ENST00000603205 907 ntBASIC4.68□□□□□ -1.66
HOXA3O43365 RNU4-89P-201ENST00000607443 133 ntBASIC4.68□□□□□ -1.66
HOXA3O43365 SDR42E1P1-201ENST00000611327 477 ntBASIC4.68□□□□□ -1.66
HOXA3O43365 AC074140.1-201ENST00000621617 208 ntBASIC4.68□□□□□ -1.66
HOXA3O43365 AL445264.1-201ENST00000621719 171 ntBASIC4.68□□□□□ -1.66
HOXA3O43365 AP003122.6-201ENST00000623831 495 ntBASIC4.68□□□□□ -1.66
HOXA3O43365 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC4.68□□□□□ -1.66
HOXA3O43365 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
HOXA3O43365 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
HOXA3O43365 AC025470.1-201ENST00000510053 2032 ntBASIC4.68□□□□□ -1.66
HOXA3O43365 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
HOXA3O43365 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
HOXA3O43365 AL031595.2-201ENST00000624215 19071 ntBASIC4.68□□□□□ -1.66
HOXA3O43365 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC4.68□□□□□ -1.66
HOXA3O43365 THUMPD3P1-201ENST00000506556 1480 ntBASIC4.68□□□□□ -1.66
HOXA3O43365 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
HOXA3O43365 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
HOXA3O43365 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC4.68□□□□□ -1.66
HOXA3O43365 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
HOXA3O43365 SELE-204ENST00000367776 3576 ntTSL 5 BASIC4.68□□□□□ -1.66
HOXA3O43365 SELE-205ENST00000367777 3576 ntTSL 5 BASIC4.68□□□□□ -1.66
HOXA3O43365 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HOXA3O43365 AC087516.1-201ENST00000561236 2428 ntBASIC4.67□□□□□ -1.66
HOXA3O43365 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HOXA3O43365 DCN-218ENST00000551354 2924 ntTSL 3 BASIC4.67□□□□□ -1.66
HOXA3O43365 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
HOXA3O43365 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
HOXA3O43365 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
HOXA3O43365 AL049780.3-201ENST00000624612 1583 ntBASIC4.67□□□□□ -1.66
HOXA3O43365 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
HOXA3O43365 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC4.67□□□□□ -1.66
HOXA3O43365 Y_RNA.160-201ENST00000363677 92 ntBASIC4.67□□□□□ -1.66
HOXA3O43365 RNU6-343P-201ENST00000364709 104 ntBASIC4.67□□□□□ -1.66
HOXA3O43365 RPL23AP17-201ENST00000401064 499 ntBASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 94.6 ms