Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC012671.1-201ENST00000451912 203 ntBASIC4.6□□□□□ -1.67
VPS28Q9UK41 NPM1P13-201ENST00000452663 865 ntBASIC4.6□□□□□ -1.67
VPS28Q9UK41 MRPL42P4-201ENST00000453267 443 ntBASIC4.6□□□□□ -1.67
VPS28Q9UK41 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC4.6□□□□□ -1.67
VPS28Q9UK41 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC4.6□□□□□ -1.67
VPS28Q9UK41 CAB39P1-201ENST00000502277 460 ntBASIC4.6□□□□□ -1.67
VPS28Q9UK41 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC4.6□□□□□ -1.67
VPS28Q9UK41 AC002456.2-201ENST00000509356 380 ntBASIC4.6□□□□□ -1.67
VPS28Q9UK41 HPRT1P1-201ENST00000509498 657 ntBASIC4.6□□□□□ -1.67
VPS28Q9UK41 AC016065.2-201ENST00000514530 444 ntBASIC4.6□□□□□ -1.67
VPS28Q9UK41 RNA5SP360-201ENST00000516555 118 ntBASIC4.6□□□□□ -1.67
VPS28Q9UK41 RNA5SP135-201ENST00000517019 125 ntBASIC4.6□□□□□ -1.67
VPS28Q9UK41 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC4.6□□□□□ -1.67
VPS28Q9UK41 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC4.6□□□□□ -1.67
VPS28Q9UK41 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
VPS28Q9UK41 DYNLL1P4-201ENST00000549314 266 ntBASIC4.6□□□□□ -1.67
VPS28Q9UK41 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC4.6□□□□□ -1.67
VPS28Q9UK41 AC074051.3-201ENST00000570238 358 ntBASIC4.6□□□□□ -1.67
VPS28Q9UK41 MTND6P33-201ENST00000571794 183 ntBASIC4.6□□□□□ -1.67
VPS28Q9UK41 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC4.6□□□□□ -1.67
VPS28Q9UK41 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC4.6□□□□□ -1.67
VPS28Q9UK41 BPIFA4P-203ENST00000603168 689 ntBASIC4.6□□□□□ -1.67
VPS28Q9UK41 AC023762.1-201ENST00000603280 584 ntBASIC4.6□□□□□ -1.67
VPS28Q9UK41 AC008966.2-201ENST00000606157 453 ntBASIC4.6□□□□□ -1.67
VPS28Q9UK41 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.6□□□□□ -1.67
VPS28Q9UK41 AL354760.1-201ENST00000608357 643 ntBASIC4.6□□□□□ -1.67
VPS28Q9UK41 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
VPS28Q9UK41 MIR378J-201ENST00000611988 109 ntBASIC4.6□□□□□ -1.67
VPS28Q9UK41 AL121873.1-201ENST00000616013 524 ntBASIC4.6□□□□□ -1.67
VPS28Q9UK41 AC084824.4-201ENST00000620106 731 ntBASIC4.6□□□□□ -1.67
VPS28Q9UK41 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC4.6□□□□□ -1.67
VPS28Q9UK41 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC4.6□□□□□ -1.67
VPS28Q9UK41 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
VPS28Q9UK41 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
VPS28Q9UK41 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC4.6□□□□□ -1.67
VPS28Q9UK41 DBF4P1-201ENST00000412976 1892 ntBASIC4.6□□□□□ -1.67
VPS28Q9UK41 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC4.6□□□□□ -1.67
VPS28Q9UK41 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.6□□□□□ -1.67
VPS28Q9UK41 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
VPS28Q9UK41 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
VPS28Q9UK41 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.59□□□□□ -1.67
VPS28Q9UK41 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.59□□□□□ -1.67
VPS28Q9UK41 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.67
VPS28Q9UK41 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
VPS28Q9UK41 U3.15-201ENST00000365398 212 ntBASIC4.59□□□□□ -1.67
VPS28Q9UK41 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
VPS28Q9UK41 MIR124-3-201ENST00000384866 87 ntBASIC4.59□□□□□ -1.67
VPS28Q9UK41 MTCO1P56-201ENST00000401674 224 ntBASIC4.59□□□□□ -1.67
VPS28Q9UK41 AL139098.1-201ENST00000407291 389 ntBASIC4.59□□□□□ -1.67
VPS28Q9UK41 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC4.59□□□□□ -1.67
VPS28Q9UK41 SNRPFP1-201ENST00000414761 252 ntBASIC4.59□□□□□ -1.67
VPS28Q9UK41 MTND5P31-201ENST00000419366 1374 ntBASIC4.59□□□□□ -1.67
VPS28Q9UK41 AC009237.2-201ENST00000421358 284 ntBASIC4.59□□□□□ -1.67
VPS28Q9UK41 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
VPS28Q9UK41 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC4.59□□□□□ -1.67
VPS28Q9UK41 OR51AB1P-201ENST00000429046 620 ntBASIC4.59□□□□□ -1.67
VPS28Q9UK41 PSMA2P3-201ENST00000429685 675 ntBASIC4.59□□□□□ -1.67
VPS28Q9UK41 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC4.59□□□□□ -1.67
VPS28Q9UK41 NDUFS5P3-201ENST00000450668 321 ntBASIC4.59□□□□□ -1.67
VPS28Q9UK41 RPS27AP17-201ENST00000463344 455 ntBASIC4.59□□□□□ -1.67
VPS28Q9UK41 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.59□□□□□ -1.67
VPS28Q9UK41 RPS26P28-201ENST00000470806 348 ntBASIC4.59□□□□□ -1.67
VPS28Q9UK41 AC139769.1-204ENST00000472297 1931 ntBASIC4.59□□□□□ -1.67
VPS28Q9UK41 GAPDHP36-201ENST00000480688 918 ntBASIC4.59□□□□□ -1.67
VPS28Q9UK41 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
VPS28Q9UK41 AC025674.1-201ENST00000507074 324 ntBASIC4.59□□□□□ -1.67
VPS28Q9UK41 AC093840.1-201ENST00000511599 336 ntBASIC4.59□□□□□ -1.67
VPS28Q9UK41 AC093755.1-201ENST00000512950 1023 ntBASIC4.59□□□□□ -1.67
VPS28Q9UK41 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC4.59□□□□□ -1.67
VPS28Q9UK41 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
VPS28Q9UK41 AC092593.2-201ENST00000513866 913 ntBASIC4.59□□□□□ -1.67
VPS28Q9UK41 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
VPS28Q9UK41 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC4.59□□□□□ -1.67
VPS28Q9UK41 AC090151.1-201ENST00000520784 730 ntBASIC4.59□□□□□ -1.67
VPS28Q9UK41 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC4.59□□□□□ -1.67
VPS28Q9UK41 DEFB130C-202ENST00000530001 230 ntBASIC4.59□□□□□ -1.67
VPS28Q9UK41 STX3-204ENST00000530221 534 ntTSL 5 BASIC4.59□□□□□ -1.67
VPS28Q9UK41 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC4.59□□□□□ -1.67
VPS28Q9UK41 AL122126.1-201ENST00000546905 1318 ntBASIC4.59□□□□□ -1.67
VPS28Q9UK41 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.59□□□□□ -1.67
VPS28Q9UK41 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
VPS28Q9UK41 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.59□□□□□ -1.67
VPS28Q9UK41 AGGF1P6-201ENST00000569213 976 ntBASIC4.59□□□□□ -1.67
VPS28Q9UK41 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC4.59□□□□□ -1.67
VPS28Q9UK41 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC4.59□□□□□ -1.67
VPS28Q9UK41 ELOCP28-201ENST00000590044 317 ntBASIC4.59□□□□□ -1.67
VPS28Q9UK41 AP001160.4-201ENST00000596971 382 ntBASIC4.59□□□□□ -1.67
VPS28Q9UK41 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC4.59□□□□□ -1.67
VPS28Q9UK41 AC096947.1-201ENST00000603233 470 ntBASIC4.59□□□□□ -1.67
VPS28Q9UK41 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC4.59□□□□□ -1.67
VPS28Q9UK41 AC090948.1-201ENST00000607464 549 ntBASIC4.59□□□□□ -1.67
VPS28Q9UK41 AC099676.1-201ENST00000608886 657 ntBASIC4.59□□□□□ -1.67
VPS28Q9UK41 AC099654.9-201ENST00000637055 678 ntBASIC4.59□□□□□ -1.67
VPS28Q9UK41 AC087821.2-201ENST00000637086 450 ntBASIC4.59□□□□□ -1.67
VPS28Q9UK41 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
VPS28Q9UK41 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.58□□□□□ -1.68
VPS28Q9UK41 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
VPS28Q9UK41 NMD3P1-201ENST00000439704 1488 ntBASIC4.58□□□□□ -1.68
VPS28Q9UK41 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.58□□□□□ -1.68
VPS28Q9UK41 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC4.58□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 121.6 ms