Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 SNORA70F-201ENST00000384142 135 ntBASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 RNA5SP332-201ENST00000391063 115 ntBASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 RNA5SP397-201ENST00000391323 118 ntBASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 SFR1P1-201ENST00000403720 688 ntBASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 LAMTOR3P1-201ENST00000428620 370 ntBASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 RPS15AP29-201ENST00000445539 400 ntBASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 Z95152.1-201ENST00000453556 656 ntBASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 AC087879.1-201ENST00000474343 374 ntBASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 RPS4XP13-201ENST00000483219 789 ntBASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 CARD16-203ENST00000525374 503 ntTSL 3 BASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 AC009101.1-201ENST00000568135 242 ntBASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 MIR6810-201ENST00000622701 70 ntBASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 AL590396.2-201ENST00000636511 1041 ntBASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC4.01□□□□□ -1.77
ZNF540Q8NDQ6 MFSD8-216ENST00000641147 4009 ntBASIC4□□□□□ -1.77
ZNF540Q8NDQ6 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4□□□□□ -1.77
ZNF540Q8NDQ6 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC4□□□□□ -1.77
ZNF540Q8NDQ6 ZNF33BP1-201ENST00000452497 1834 ntBASIC4□□□□□ -1.77
ZNF540Q8NDQ6 CPHL1P-201ENST00000461341 3407 ntBASIC4□□□□□ -1.77
ZNF540Q8NDQ6 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC4□□□□□ -1.77
ZNF540Q8NDQ6 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4□□□□□ -1.77
ZNF540Q8NDQ6 ZNF137P-201ENST00000456718 1920 ntBASIC4□□□□□ -1.77
ZNF540Q8NDQ6 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4□□□□□ -1.77
ZNF540Q8NDQ6 AC016716.1-201ENST00000265882 708 ntBASIC4□□□□□ -1.77
ZNF540Q8NDQ6 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC4□□□□□ -1.77
ZNF540Q8NDQ6 AL590240.1-201ENST00000334118 313 ntBASIC4□□□□□ -1.77
ZNF540Q8NDQ6 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC4□□□□□ -1.77
ZNF540Q8NDQ6 NPM1P10-201ENST00000398310 865 ntBASIC4□□□□□ -1.77
ZNF540Q8NDQ6 RSU1P3-201ENST00000412878 835 ntBASIC4□□□□□ -1.77
ZNF540Q8NDQ6 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4□□□□□ -1.77
ZNF540Q8NDQ6 AC069213.2-201ENST00000420238 366 ntBASIC4□□□□□ -1.77
ZNF540Q8NDQ6 RPS27AP7-201ENST00000422792 455 ntBASIC4□□□□□ -1.77
ZNF540Q8NDQ6 RPL18P10-201ENST00000425606 538 ntBASIC4□□□□□ -1.77
ZNF540Q8NDQ6 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC4□□□□□ -1.77
ZNF540Q8NDQ6 AC016712.1-201ENST00000431088 378 ntBASIC4□□□□□ -1.77
ZNF540Q8NDQ6 RPEP2-201ENST00000432149 701 ntBASIC4□□□□□ -1.77
ZNF540Q8NDQ6 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC4□□□□□ -1.77
ZNF540Q8NDQ6 HSD52-202ENST00000436225 772 ntTSL 3 BASIC4□□□□□ -1.77
ZNF540Q8NDQ6 RPL21P133-201ENST00000443666 476 ntBASIC4□□□□□ -1.77
ZNF540Q8NDQ6 CFTRP1-201ENST00000456646 183 ntBASIC4□□□□□ -1.77
ZNF540Q8NDQ6 MTND2P28-201ENST00000457540 1044 ntBASIC4□□□□□ -1.77
ZNF540Q8NDQ6 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC4□□□□□ -1.77
ZNF540Q8NDQ6 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC4□□□□□ -1.77
ZNF540Q8NDQ6 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC4□□□□□ -1.77
ZNF540Q8NDQ6 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC4□□□□□ -1.77
ZNF540Q8NDQ6 AC025554.1-201ENST00000505641 188 ntBASIC4□□□□□ -1.77
ZNF540Q8NDQ6 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC4□□□□□ -1.77
ZNF540Q8NDQ6 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4□□□□□ -1.77
ZNF540Q8NDQ6 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC4□□□□□ -1.77
ZNF540Q8NDQ6 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC4□□□□□ -1.77
ZNF540Q8NDQ6 MTCYBP41-201ENST00000528913 1123 ntBASIC4□□□□□ -1.77
ZNF540Q8NDQ6 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC4□□□□□ -1.77
ZNF540Q8NDQ6 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC4□□□□□ -1.77
ZNF540Q8NDQ6 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC4□□□□□ -1.77
ZNF540Q8NDQ6 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC4□□□□□ -1.77
ZNF540Q8NDQ6 AC069061.3-201ENST00000582254 823 ntBASIC4□□□□□ -1.77
ZNF540Q8NDQ6 AC068790.4-201ENST00000602474 263 ntBASIC4□□□□□ -1.77
ZNF540Q8NDQ6 AC012467.1-201ENST00000607740 256 ntBASIC4□□□□□ -1.77
ZNF540Q8NDQ6 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC4□□□□□ -1.77
ZNF540Q8NDQ6 AP005019.3-201ENST00000620418 560 ntBASIC4□□□□□ -1.77
ZNF540Q8NDQ6 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC4□□□□□ -1.77
ZNF540Q8NDQ6 U3.53-201ENST00000628922 216 ntBASIC4□□□□□ -1.77
ZNF540Q8NDQ6 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC4□□□□□ -1.77
ZNF540Q8NDQ6 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC4□□□□□ -1.77
ZNF540Q8NDQ6 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 RNU6-328P-201ENST00000390887 106 ntBASIC3.99□□□□□ -1.77
ZNF540Q8NDQ6 PTMAP5-201ENST00000393073 333 ntBASIC3.99□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms