Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 MTCO1P6-201ENST00000481192 1384 ntBASIC4.65□□□□□ -1.67
USP41Q3LFD5 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.65□□□□□ -1.67
USP41Q3LFD5 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
USP41Q3LFD5 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.64□□□□□ -1.67
USP41Q3LFD5 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
USP41Q3LFD5 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
USP41Q3LFD5 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
USP41Q3LFD5 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
USP41Q3LFD5 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
USP41Q3LFD5 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
USP41Q3LFD5 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
USP41Q3LFD5 RNA5SP175-201ENST00000364275 119 ntBASIC4.64□□□□□ -1.67
USP41Q3LFD5 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
USP41Q3LFD5 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC4.64□□□□□ -1.67
USP41Q3LFD5 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
USP41Q3LFD5 SNORD116-12-201ENST00000384468 92 ntBASIC4.64□□□□□ -1.67
USP41Q3LFD5 RNU6-178P-201ENST00000384631 104 ntBASIC4.64□□□□□ -1.67
USP41Q3LFD5 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
USP41Q3LFD5 MIR921-201ENST00000401133 56 ntBASIC4.64□□□□□ -1.67
USP41Q3LFD5 RN7SKP27-201ENST00000410684 333 ntBASIC4.64□□□□□ -1.67
USP41Q3LFD5 AL592310.1-201ENST00000414330 671 ntBASIC4.64□□□□□ -1.67
USP41Q3LFD5 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC4.64□□□□□ -1.67
USP41Q3LFD5 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC4.64□□□□□ -1.67
USP41Q3LFD5 COX6CP15-201ENST00000426313 211 ntBASIC4.64□□□□□ -1.67
USP41Q3LFD5 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC4.64□□□□□ -1.67
USP41Q3LFD5 ARL6IP1P2-201ENST00000431356 563 ntBASIC4.64□□□□□ -1.67
USP41Q3LFD5 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC4.64□□□□□ -1.67
USP41Q3LFD5 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC4.64□□□□□ -1.67
USP41Q3LFD5 OFD1P7Y-201ENST00000454643 1155 ntBASIC4.64□□□□□ -1.67
USP41Q3LFD5 AC073522.1-201ENST00000483312 377 ntBASIC4.64□□□□□ -1.67
USP41Q3LFD5 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
USP41Q3LFD5 AC010285.3-201ENST00000511668 676 ntBASIC4.64□□□□□ -1.67
USP41Q3LFD5 snoZ278.1-201ENST00000517059 112 ntBASIC4.64□□□□□ -1.67
USP41Q3LFD5 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC4.64□□□□□ -1.67
USP41Q3LFD5 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC4.64□□□□□ -1.67
USP41Q3LFD5 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.64□□□□□ -1.67
USP41Q3LFD5 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC4.64□□□□□ -1.67
USP41Q3LFD5 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC4.64□□□□□ -1.67
USP41Q3LFD5 NIFKP8-201ENST00000560500 874 ntBASIC4.64□□□□□ -1.67
USP41Q3LFD5 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC4.64□□□□□ -1.67
USP41Q3LFD5 AC090948.2-201ENST00000607363 564 ntBASIC4.64□□□□□ -1.67
USP41Q3LFD5 AC243654.2-201ENST00000612843 443 ntBASIC4.64□□□□□ -1.67
USP41Q3LFD5 AL021997.2-201ENST00000615674 271 ntBASIC4.64□□□□□ -1.67
USP41Q3LFD5 AC023509.5-201ENST00000617434 807 ntBASIC4.64□□□□□ -1.67
USP41Q3LFD5 AL109659.3-201ENST00000624985 950 ntBASIC4.64□□□□□ -1.67
USP41Q3LFD5 AC092608.3-201ENST00000625017 386 ntBASIC4.64□□□□□ -1.67
USP41Q3LFD5 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.64□□□□□ -1.67
USP41Q3LFD5 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.64□□□□□ -1.67
USP41Q3LFD5 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
USP41Q3LFD5 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.64□□□□□ -1.67
USP41Q3LFD5 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
USP41Q3LFD5 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC4.64□□□□□ -1.67
USP41Q3LFD5 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
USP41Q3LFD5 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
USP41Q3LFD5 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
USP41Q3LFD5 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.64□□□□□ -1.67
USP41Q3LFD5 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
USP41Q3LFD5 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
USP41Q3LFD5 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.63□□□□□ -1.67
USP41Q3LFD5 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
USP41Q3LFD5 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC4.63□□□□□ -1.67
USP41Q3LFD5 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC4.63□□□□□ -1.67
USP41Q3LFD5 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
USP41Q3LFD5 RNU1-64P-201ENST00000365443 163 ntBASIC4.63□□□□□ -1.67
USP41Q3LFD5 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
USP41Q3LFD5 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
USP41Q3LFD5 SNORA37-201ENST00000384504 129 ntBASIC4.63□□□□□ -1.67
USP41Q3LFD5 RNU6-906P-201ENST00000384700 70 ntBASIC4.63□□□□□ -1.67
USP41Q3LFD5 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.63□□□□□ -1.67
USP41Q3LFD5 RNU6-77P-201ENST00000410554 91 ntBASIC4.63□□□□□ -1.67
USP41Q3LFD5 EIF4A1P3-201ENST00000411521 244 ntBASIC4.63□□□□□ -1.67
USP41Q3LFD5 SSR1P2-201ENST00000415208 787 ntBASIC4.63□□□□□ -1.67
USP41Q3LFD5 AL158073.1-201ENST00000426848 1104 ntBASIC4.63□□□□□ -1.67
USP41Q3LFD5 BTF3P10-201ENST00000433415 495 ntBASIC4.63□□□□□ -1.67
USP41Q3LFD5 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC4.63□□□□□ -1.67
USP41Q3LFD5 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC4.63□□□□□ -1.67
USP41Q3LFD5 MTND6P18-201ENST00000439477 513 ntBASIC4.63□□□□□ -1.67
USP41Q3LFD5 UBE2V1P5-201ENST00000440070 405 ntBASIC4.63□□□□□ -1.67
USP41Q3LFD5 AC092809.1-201ENST00000441469 474 ntBASIC4.63□□□□□ -1.67
USP41Q3LFD5 MTCYBP42-201ENST00000444653 1130 ntBASIC4.63□□□□□ -1.67
USP41Q3LFD5 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.63□□□□□ -1.67
USP41Q3LFD5 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC4.63□□□□□ -1.67
USP41Q3LFD5 DDX39BP2-208ENST00000453923 258 ntBASIC4.63□□□□□ -1.67
USP41Q3LFD5 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.63□□□□□ -1.67
USP41Q3LFD5 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC4.63□□□□□ -1.67
USP41Q3LFD5 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC4.63□□□□□ -1.67
USP41Q3LFD5 AC020699.1-201ENST00000505161 445 ntBASIC4.63□□□□□ -1.67
USP41Q3LFD5 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC4.63□□□□□ -1.67
USP41Q3LFD5 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC4.63□□□□□ -1.67
USP41Q3LFD5 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC4.63□□□□□ -1.67
USP41Q3LFD5 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC4.63□□□□□ -1.67
USP41Q3LFD5 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC4.63□□□□□ -1.67
USP41Q3LFD5 KCTD9P2-201ENST00000512203 1013 ntBASIC4.63□□□□□ -1.67
USP41Q3LFD5 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4.63□□□□□ -1.67
USP41Q3LFD5 COX6B1P6-201ENST00000522347 255 ntBASIC4.63□□□□□ -1.67
USP41Q3LFD5 IGJP1-201ENST00000522682 475 ntBASIC4.63□□□□□ -1.67
USP41Q3LFD5 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
USP41Q3LFD5 DEFB130C-202ENST00000530001 230 ntBASIC4.63□□□□□ -1.67
USP41Q3LFD5 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC4.63□□□□□ -1.67
USP41Q3LFD5 CYCSP28-201ENST00000534284 321 ntBASIC4.63□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 76.6 ms