Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SEPT7P7-201ENST00000420492 1301 ntBASIC4.52□□□□□ -1.69
COL28A1Q2UY09 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.52□□□□□ -1.69
COL28A1Q2UY09 RAD17P1-201ENST00000418130 2042 ntBASIC4.52□□□□□ -1.69
COL28A1Q2UY09 HMGB1P5-201ENST00000255320 642 ntBASIC4.52□□□□□ -1.69
COL28A1Q2UY09 IL6STP1-201ENST00000346911 1020 ntBASIC4.52□□□□□ -1.69
COL28A1Q2UY09 snoZ40.1-201ENST00000364540 72 ntBASIC4.52□□□□□ -1.69
COL28A1Q2UY09 RNU1-13P-201ENST00000384499 162 ntBASIC4.52□□□□□ -1.69
COL28A1Q2UY09 MIR513B-201ENST00000385136 84 ntBASIC4.52□□□□□ -1.69
COL28A1Q2UY09 U3.30-201ENST00000391308 210 ntBASIC4.52□□□□□ -1.69
COL28A1Q2UY09 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
COL28A1Q2UY09 MAST4-207ENST00000407621 559 ntTSL 2 BASIC4.52□□□□□ -1.69
COL28A1Q2UY09 CRYBB2P1-203ENST00000415709 538 ntBASIC4.52□□□□□ -1.69
COL28A1Q2UY09 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC4.52□□□□□ -1.69
COL28A1Q2UY09 QRSL1P2-201ENST00000418582 964 ntBASIC4.52□□□□□ -1.69
COL28A1Q2UY09 HMGB1P49-201ENST00000418882 569 ntBASIC4.52□□□□□ -1.69
COL28A1Q2UY09 OR2X1P-201ENST00000421144 687 ntBASIC4.52□□□□□ -1.69
COL28A1Q2UY09 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC4.52□□□□□ -1.69
COL28A1Q2UY09 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC4.52□□□□□ -1.69
COL28A1Q2UY09 MTCO1P3-201ENST00000429327 192 ntBASIC4.52□□□□□ -1.69
COL28A1Q2UY09 MTCO1P54-201ENST00000430139 712 ntBASIC4.52□□□□□ -1.69
COL28A1Q2UY09 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
COL28A1Q2UY09 TMX2P1-201ENST00000436507 708 ntBASIC4.52□□□□□ -1.69
COL28A1Q2UY09 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC4.52□□□□□ -1.69
COL28A1Q2UY09 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC4.52□□□□□ -1.69
COL28A1Q2UY09 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC4.52□□□□□ -1.69
COL28A1Q2UY09 EIF4A1P11-201ENST00000451239 222 ntBASIC4.52□□□□□ -1.69
COL28A1Q2UY09 AC233982.1-201ENST00000451247 436 ntBASIC4.52□□□□□ -1.69
COL28A1Q2UY09 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC4.52□□□□□ -1.69
COL28A1Q2UY09 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC4.52□□□□□ -1.69
COL28A1Q2UY09 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC4.52□□□□□ -1.69
COL28A1Q2UY09 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC4.52□□□□□ -1.69
COL28A1Q2UY09 AC096992.1-201ENST00000459808 709 ntBASIC4.52□□□□□ -1.69
COL28A1Q2UY09 RPS17P2-201ENST00000461663 408 ntBASIC4.52□□□□□ -1.69
COL28A1Q2UY09 AC126121.1-201ENST00000482313 553 ntBASIC4.52□□□□□ -1.69
COL28A1Q2UY09 IGLVIV-65-201ENST00000517313 360 ntBASIC4.52□□□□□ -1.69
COL28A1Q2UY09 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC4.52□□□□□ -1.69
COL28A1Q2UY09 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC4.52□□□□□ -1.69
COL28A1Q2UY09 SMARCE1P4-201ENST00000523647 241 ntBASIC4.52□□□□□ -1.69
COL28A1Q2UY09 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC4.52□□□□□ -1.69
COL28A1Q2UY09 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
COL28A1Q2UY09 AC023050.2-201ENST00000544968 387 ntBASIC4.52□□□□□ -1.69
COL28A1Q2UY09 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC4.52□□□□□ -1.69
COL28A1Q2UY09 MTND4P33-201ENST00000556706 766 ntBASIC4.52□□□□□ -1.69
COL28A1Q2UY09 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC4.52□□□□□ -1.69
COL28A1Q2UY09 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC4.52□□□□□ -1.69
COL28A1Q2UY09 MIR3912-201ENST00000577566 105 ntBASIC4.52□□□□□ -1.69
COL28A1Q2UY09 AC091979.2-201ENST00000607514 214 ntBASIC4.52□□□□□ -1.69
COL28A1Q2UY09 AP000255.1-201ENST00000610276 676 ntBASIC4.52□□□□□ -1.69
COL28A1Q2UY09 AC105227.2-201ENST00000615075 605 ntBASIC4.52□□□□□ -1.69
COL28A1Q2UY09 AC009318.3-201ENST00000616916 503 ntBASIC4.52□□□□□ -1.69
COL28A1Q2UY09 AC244100.1-202ENST00000621554 382 ntBASIC4.52□□□□□ -1.69
COL28A1Q2UY09 CR381572.2-201ENST00000624852 397 ntBASIC4.52□□□□□ -1.69
COL28A1Q2UY09 ZNF663P-202ENST00000641770 1131 ntBASIC4.52□□□□□ -1.69
COL28A1Q2UY09 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL28A1Q2UY09 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL28A1Q2UY09 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
COL28A1Q2UY09 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL28A1Q2UY09 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.52□□□□□ -1.69
COL28A1Q2UY09 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC4.52□□□□□ -1.69
COL28A1Q2UY09 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
COL28A1Q2UY09 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.52□□□□□ -1.69
COL28A1Q2UY09 DBF4P1-201ENST00000412976 1892 ntBASIC4.52□□□□□ -1.69
COL28A1Q2UY09 ST7-212ENST00000422922 1887 ntTSL 5 BASIC4.52□□□□□ -1.69
COL28A1Q2UY09 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.52□□□□□ -1.69
COL28A1Q2UY09 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC4.51□□□□□ -1.69
COL28A1Q2UY09 AC139713.2-215ENST00000641428 5037 ntBASIC4.51□□□□□ -1.69
COL28A1Q2UY09 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC4.51□□□□□ -1.69
COL28A1Q2UY09 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
COL28A1Q2UY09 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.51□□□□□ -1.69
COL28A1Q2UY09 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.51□□□□□ -1.69
COL28A1Q2UY09 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4.51□□□□□ -1.69
COL28A1Q2UY09 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
COL28A1Q2UY09 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC4.51□□□□□ -1.69
COL28A1Q2UY09 BMS1P3-201ENST00000372011 932 ntBASIC4.51□□□□□ -1.69
COL28A1Q2UY09 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC4.51□□□□□ -1.69
COL28A1Q2UY09 VDAC2P1-201ENST00000399358 958 ntBASIC4.51□□□□□ -1.69
COL28A1Q2UY09 RPS24P12-201ENST00000402084 394 ntBASIC4.51□□□□□ -1.69
COL28A1Q2UY09 MTCO2P21-201ENST00000419780 677 ntBASIC4.51□□□□□ -1.69
COL28A1Q2UY09 E2F6P2-201ENST00000420708 748 ntBASIC4.51□□□□□ -1.69
COL28A1Q2UY09 AC091390.3-201ENST00000426478 338 ntBASIC4.51□□□□□ -1.69
COL28A1Q2UY09 AL031736.2-201ENST00000426573 787 ntBASIC4.51□□□□□ -1.69
COL28A1Q2UY09 AL132765.1-201ENST00000434165 553 ntBASIC4.51□□□□□ -1.69
COL28A1Q2UY09 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC4.51□□□□□ -1.69
COL28A1Q2UY09 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC4.51□□□□□ -1.69
COL28A1Q2UY09 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC4.51□□□□□ -1.69
COL28A1Q2UY09 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC4.51□□□□□ -1.69
COL28A1Q2UY09 FTH1P25-201ENST00000447665 469 ntBASIC4.51□□□□□ -1.69
COL28A1Q2UY09 AC005410.1-202ENST00000460347 485 ntBASIC4.51□□□□□ -1.69
COL28A1Q2UY09 RPL7L1P8-201ENST00000469911 741 ntBASIC4.51□□□□□ -1.69
COL28A1Q2UY09 AC011037.1-201ENST00000483964 558 ntBASIC4.51□□□□□ -1.69
COL28A1Q2UY09 AC073073.1-201ENST00000493920 463 ntBASIC4.51□□□□□ -1.69
COL28A1Q2UY09 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC4.51□□□□□ -1.69
COL28A1Q2UY09 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC4.51□□□□□ -1.69
COL28A1Q2UY09 AC098862.1-201ENST00000504991 413 ntBASIC4.51□□□□□ -1.69
COL28A1Q2UY09 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC4.51□□□□□ -1.69
COL28A1Q2UY09 RNA5SP135-201ENST00000517019 125 ntBASIC4.51□□□□□ -1.69
COL28A1Q2UY09 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC4.51□□□□□ -1.69
COL28A1Q2UY09 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC4.51□□□□□ -1.69
COL28A1Q2UY09 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC4.51□□□□□ -1.69
COL28A1Q2UY09 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC4.51□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 88.2 ms