Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 RPL23AP22-201ENST00000437556 453 ntBASIC2.72□□□□□ -1.97
FOXA3P55318 AC006466.1-201ENST00000438721 289 ntBASIC2.72□□□□□ -1.97
FOXA3P55318 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC2.72□□□□□ -1.97
FOXA3P55318 ATP6V0E1P2-201ENST00000441771 245 ntBASIC2.72□□□□□ -1.97
FOXA3P55318 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC2.72□□□□□ -1.97
FOXA3P55318 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC2.72□□□□□ -1.97
FOXA3P55318 HMGN2P21-201ENST00000447764 270 ntBASIC2.72□□□□□ -1.97
FOXA3P55318 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC2.72□□□□□ -1.97
FOXA3P55318 PTGES3P5-201ENST00000455109 434 ntBASIC2.72□□□□□ -1.97
FOXA3P55318 RPS4XP2-201ENST00000458402 793 ntBASIC2.72□□□□□ -1.97
FOXA3P55318 OR9M1P-201ENST00000459641 921 ntBASIC2.72□□□□□ -1.97
FOXA3P55318 AC011276.1-201ENST00000469688 323 ntBASIC2.72□□□□□ -1.97
FOXA3P55318 RN7SL303P-201ENST00000469773 251 ntBASIC2.72□□□□□ -1.97
FOXA3P55318 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC2.72□□□□□ -1.97
FOXA3P55318 LARP7P4-201ENST00000481075 878 ntBASIC2.72□□□□□ -1.97
FOXA3P55318 AC091167.1-201ENST00000492017 396 ntBASIC2.72□□□□□ -1.97
FOXA3P55318 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC2.72□□□□□ -1.97
FOXA3P55318 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC2.72□□□□□ -1.97
FOXA3P55318 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
FOXA3P55318 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC2.72□□□□□ -1.97
FOXA3P55318 AC005921.1-201ENST00000510589 286 ntBASIC2.72□□□□□ -1.97
FOXA3P55318 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC2.72□□□□□ -1.97
FOXA3P55318 TBCA-203ENST00000517679 545 ntTSL 3 BASIC2.72□□□□□ -1.97
FOXA3P55318 OR5D17P-201ENST00000531492 978 ntBASIC2.72□□□□□ -1.97
FOXA3P55318 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC2.72□□□□□ -1.97
FOXA3P55318 AC004024.1-201ENST00000549244 247 ntBASIC2.72□□□□□ -1.97
FOXA3P55318 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC2.72□□□□□ -1.97
FOXA3P55318 AC027281.1-201ENST00000574178 758 ntBASIC2.72□□□□□ -1.97
FOXA3P55318 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC2.72□□□□□ -1.97
FOXA3P55318 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC2.72□□□□□ -1.97
FOXA3P55318 LLPHP1-201ENST00000603571 367 ntBASIC2.72□□□□□ -1.97
FOXA3P55318 RNA5SP108-201ENST00000605921 117 ntBASIC2.72□□□□□ -1.97
FOXA3P55318 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
FOXA3P55318 AC114781.5-201ENST00000615297 108 ntBASIC2.72□□□□□ -1.97
FOXA3P55318 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC2.72□□□□□ -1.97
FOXA3P55318 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
FOXA3P55318 AC007656.2-201ENST00000624902 4547 ntBASIC2.72□□□□□ -1.97
FOXA3P55318 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC2.72□□□□□ -1.97
FOXA3P55318 CASC19-261ENST00000641853 1638 ntBASIC2.71□□□□□ -1.97
FOXA3P55318 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.97
FOXA3P55318 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.97
FOXA3P55318 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC2.71□□□□□ -1.97
FOXA3P55318 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
FOXA3P55318 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC2.71□□□□□ -1.98
FOXA3P55318 AC073429.2-201ENST00000569694 1444 ntBASIC2.71□□□□□ -1.98
FOXA3P55318 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC2.71□□□□□ -1.98
FOXA3P55318 RNA5SP189-201ENST00000364920 115 ntBASIC2.71□□□□□ -1.98
FOXA3P55318 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC2.71□□□□□ -1.98
FOXA3P55318 HMGB1P10-201ENST00000395823 563 ntBASIC2.71□□□□□ -1.98
FOXA3P55318 SOD2P1-201ENST00000396543 562 ntBASIC2.71□□□□□ -1.98
FOXA3P55318 ZNF602P-201ENST00000405929 924 ntBASIC2.71□□□□□ -1.98
FOXA3P55318 HMGB3P18-201ENST00000406327 590 ntBASIC2.71□□□□□ -1.98
FOXA3P55318 ELOCP19-201ENST00000411919 318 ntBASIC2.71□□□□□ -1.98
FOXA3P55318 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC2.71□□□□□ -1.98
FOXA3P55318 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC2.71□□□□□ -1.98
FOXA3P55318 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
FOXA3P55318 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC2.71□□□□□ -1.98
FOXA3P55318 RPL23AP38-201ENST00000423801 469 ntBASIC2.71□□□□□ -1.98
FOXA3P55318 AC006455.6-201ENST00000426192 893 ntBASIC2.71□□□□□ -1.98
FOXA3P55318 AL136987.1-201ENST00000434300 396 ntTSL 5 BASIC2.71□□□□□ -1.98
FOXA3P55318 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC2.71□□□□□ -1.98
FOXA3P55318 AC125238.1-201ENST00000448842 249 ntBASIC2.71□□□□□ -1.98
FOXA3P55318 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC2.71□□□□□ -1.98
FOXA3P55318 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC2.71□□□□□ -1.98
FOXA3P55318 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC2.71□□□□□ -1.98
FOXA3P55318 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC2.71□□□□□ -1.98
FOXA3P55318 RPS27P29-201ENST00000463110 252 ntBASIC2.71□□□□□ -1.98
FOXA3P55318 RPL21P103-201ENST00000479921 488 ntBASIC2.71□□□□□ -1.98
FOXA3P55318 AC078918.1-201ENST00000498515 228 ntBASIC2.71□□□□□ -1.98
FOXA3P55318 HMGB1P21-201ENST00000502313 581 ntBASIC2.71□□□□□ -1.98
FOXA3P55318 OR5H4P-201ENST00000510851 923 ntBASIC2.71□□□□□ -1.98
FOXA3P55318 ZNF346-IT1-201ENST00000515264 745 ntTSL 3 BASIC2.71□□□□□ -1.98
FOXA3P55318 FABP5P12-201ENST00000515543 389 ntBASIC2.71□□□□□ -1.98
FOXA3P55318 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC2.71□□□□□ -1.98
FOXA3P55318 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC2.71□□□□□ -1.98
FOXA3P55318 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC2.71□□□□□ -1.98
FOXA3P55318 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC2.71□□□□□ -1.98
FOXA3P55318 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC2.71□□□□□ -1.98
FOXA3P55318 AC026333.2-201ENST00000542164 106 ntBASIC2.71□□□□□ -1.98
FOXA3P55318 UBE2NP1-201ENST00000545592 458 ntBASIC2.71□□□□□ -1.98
FOXA3P55318 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC2.71□□□□□ -1.98
FOXA3P55318 TRAV15-201ENST00000556680 249 ntBASIC2.71□□□□□ -1.98
FOXA3P55318 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC2.71□□□□□ -1.98
FOXA3P55318 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC2.71□□□□□ -1.98
FOXA3P55318 KPNA2P3-201ENST00000584190 848 ntBASIC2.71□□□□□ -1.98
FOXA3P55318 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC2.71□□□□□ -1.98
FOXA3P55318 AC008507.1-201ENST00000587506 734 ntBASIC2.71□□□□□ -1.98
FOXA3P55318 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC2.71□□□□□ -1.98
FOXA3P55318 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC2.71□□□□□ -1.98
FOXA3P55318 AC013244.1-201ENST00000604279 193 ntBASIC2.71□□□□□ -1.98
FOXA3P55318 AC107294.3-201ENST00000609211 526 ntBASIC2.71□□□□□ -1.98
FOXA3P55318 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC2.71□□□□□ -1.98
FOXA3P55318 AL049539.1-201ENST00000611964 459 ntBASIC2.71□□□□□ -1.98
FOXA3P55318 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC2.71□□□□□ -1.98
FOXA3P55318 AC018816.2-201ENST00000621460 353 ntBASIC2.71□□□□□ -1.98
FOXA3P55318 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
FOXA3P55318 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
FOXA3P55318 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC2.71□□□□□ -1.98
FOXA3P55318 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC2.7□□□□□ -1.98
FOXA3P55318 AC007823.1-201ENST00000569932 1566 ntBASIC2.7□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 84.6 ms