Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC4.26□□□□□ -1.73
COL5A3P25940 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.26□□□□□ -1.73
COL5A3P25940 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
COL5A3P25940 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL5A3P25940 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.26□□□□□ -1.73
COL5A3P25940 MTND4P22-201ENST00000413116 1169 ntBASIC4.26□□□□□ -1.73
COL5A3P25940 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC4.26□□□□□ -1.73
COL5A3P25940 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC4.26□□□□□ -1.73
COL5A3P25940 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC4.26□□□□□ -1.73
COL5A3P25940 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC4.26□□□□□ -1.73
COL5A3P25940 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC4.26□□□□□ -1.73
COL5A3P25940 AC069306.1-201ENST00000507006 843 ntBASIC4.26□□□□□ -1.73
COL5A3P25940 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC4.26□□□□□ -1.73
COL5A3P25940 AC079296.1-202ENST00000521394 960 ntTSL 4 BASIC4.26□□□□□ -1.73
COL5A3P25940 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC4.26□□□□□ -1.73
COL5A3P25940 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC4.26□□□□□ -1.73
COL5A3P25940 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC4.26□□□□□ -1.73
COL5A3P25940 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
COL5A3P25940 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL5A3P25940 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
COL5A3P25940 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
COL5A3P25940 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC4.25□□□□□ -1.73
COL5A3P25940 VN1R51P-201ENST00000411675 945 ntBASIC4.25□□□□□ -1.73
COL5A3P25940 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC4.25□□□□□ -1.73
COL5A3P25940 AL158071.1-201ENST00000430315 461 ntBASIC4.25□□□□□ -1.73
COL5A3P25940 AL139132.1-201ENST00000431587 344 ntBASIC4.25□□□□□ -1.73
COL5A3P25940 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC4.25□□□□□ -1.73
COL5A3P25940 AC074367.1-201ENST00000438685 1125 ntBASIC4.25□□□□□ -1.73
COL5A3P25940 AC107083.1-201ENST00000439643 279 ntBASIC4.25□□□□□ -1.73
COL5A3P25940 CCRL1P1-201ENST00000449542 1053 ntBASIC4.25□□□□□ -1.73
COL5A3P25940 RPL21P6-201ENST00000479171 504 ntBASIC4.25□□□□□ -1.73
COL5A3P25940 RPS3AP50-201ENST00000487064 803 ntBASIC4.25□□□□□ -1.73
COL5A3P25940 AC021678.1-201ENST00000505195 936 ntBASIC4.25□□□□□ -1.73
COL5A3P25940 AC008885.1-201ENST00000514930 301 ntBASIC4.25□□□□□ -1.73
COL5A3P25940 RNU4ATAC17P-201ENST00000517272 120 ntBASIC4.25□□□□□ -1.73
COL5A3P25940 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC4.25□□□□□ -1.73
COL5A3P25940 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
COL5A3P25940 DUXAP6-201ENST00000553858 601 ntBASIC4.25□□□□□ -1.73
COL5A3P25940 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL5A3P25940 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL5A3P25940 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC4.25□□□□□ -1.73
COL5A3P25940 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
COL5A3P25940 IARS-201ENST00000375627 697 ntTSL 3 BASIC4.24□□□□□ -1.73
COL5A3P25940 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
COL5A3P25940 AC093719.1-202ENST00000392735 373 ntBASIC4.24□□□□□ -1.73
COL5A3P25940 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
COL5A3P25940 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.24□□□□□ -1.73
COL5A3P25940 MIR486-1-201ENST00000612171 68 ntBASIC4.24□□□□□ -1.73
COL5A3P25940 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
COL5A3P25940 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC4.24□□□□□ -1.73
COL5A3P25940 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL5A3P25940 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL5A3P25940 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
COL5A3P25940 OSBPL9P4-201ENST00000371707 1800 ntBASIC4.24□□□□□ -1.73
COL5A3P25940 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
COL5A3P25940 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC4.24□□□□□ -1.73
COL5A3P25940 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.24□□□□□ -1.73
COL5A3P25940 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC4.24□□□□□ -1.73
COL5A3P25940 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL5A3P25940 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.24□□□□□ -1.73
COL5A3P25940 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL5A3P25940 RNU6-729P-201ENST00000384399 107 ntBASIC4.24□□□□□ -1.73
COL5A3P25940 RNU4-47P-201ENST00000410876 114 ntBASIC4.24□□□□□ -1.73
COL5A3P25940 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC4.24□□□□□ -1.73
COL5A3P25940 IFNNP1-201ENST00000429219 553 ntBASIC4.24□□□□□ -1.73
COL5A3P25940 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC4.24□□□□□ -1.73
COL5A3P25940 MRPS18BP2-201ENST00000434310 759 ntBASIC4.24□□□□□ -1.73
COL5A3P25940 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
COL5A3P25940 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC4.24□□□□□ -1.73
COL5A3P25940 AC100793.4-201ENST00000613683 429 ntBASIC4.24□□□□□ -1.73
COL5A3P25940 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL5A3P25940 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC4.23□□□□□ -1.73
COL5A3P25940 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC4.23□□□□□ -1.73
COL5A3P25940 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC4.23□□□□□ -1.73
COL5A3P25940 SAGE4P-201ENST00000442271 3381 ntBASIC4.23□□□□□ -1.73
COL5A3P25940 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL5A3P25940 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.23□□□□□ -1.73
COL5A3P25940 MIR93-201ENST00000385024 80 ntBASIC4.23□□□□□ -1.73
COL5A3P25940 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC4.23□□□□□ -1.73
COL5A3P25940 ELOCP18-201ENST00000434209 337 ntBASIC4.23□□□□□ -1.73
COL5A3P25940 AF228730.2-201ENST00000438784 848 ntBASIC4.23□□□□□ -1.73
COL5A3P25940 TEX41-209ENST00000451478 452 ntTSL 2 BASIC4.23□□□□□ -1.73
COL5A3P25940 AC004069.2-201ENST00000505438 1114 ntBASIC4.23□□□□□ -1.73
COL5A3P25940 AC138409.2-202ENST00000507274 458 ntBASIC4.23□□□□□ -1.73
COL5A3P25940 OR4R3P-201ENST00000525084 838 ntBASIC4.23□□□□□ -1.73
COL5A3P25940 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC4.23□□□□□ -1.73
COL5A3P25940 AC006504.3-201ENST00000586818 523 ntBASIC4.23□□□□□ -1.73
COL5A3P25940 AL451007.1-201ENST00000595491 289 ntBASIC4.23□□□□□ -1.73
COL5A3P25940 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC4.23□□□□□ -1.73
COL5A3P25940 AC116312.1-201ENST00000606841 314 ntBASIC4.23□□□□□ -1.73
COL5A3P25940 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC4.23□□□□□ -1.73
COL5A3P25940 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
COL5A3P25940 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
COL5A3P25940 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
COL5A3P25940 AC083843.3-201ENST00000623679 2186 ntBASIC4.22□□□□□ -1.73
COL5A3P25940 AC007390.2-201ENST00000606229 3803 ntBASIC4.22□□□□□ -1.73
COL5A3P25940 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
COL5A3P25940 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
COL5A3P25940 SNORA80A-201ENST00000363922 136 ntBASIC4.22□□□□□ -1.73
COL5A3P25940 USP9YP36-201ENST00000424581 829 ntBASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms