Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL3A1P02461 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL3A1P02461 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL3A1P02461 RN7SKP224-201ENST00000364140 325 ntBASIC5.31□□□□□ -1.56
COL3A1P02461 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC5.31□□□□□ -1.56
COL3A1P02461 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL3A1P02461 ARL6IP1P2-201ENST00000431356 563 ntBASIC5.31□□□□□ -1.56
COL3A1P02461 Z74696.2-201ENST00000436514 498 ntBASIC5.31□□□□□ -1.56
COL3A1P02461 NANOGP10-201ENST00000453325 895 ntBASIC5.31□□□□□ -1.56
COL3A1P02461 RPL31P3-201ENST00000458430 332 ntBASIC5.31□□□□□ -1.56
COL3A1P02461 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC5.31□□□□□ -1.56
COL3A1P02461 AC110792.1-201ENST00000491826 472 ntBASIC5.31□□□□□ -1.56
COL3A1P02461 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC5.31□□□□□ -1.56
COL3A1P02461 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC5.31□□□□□ -1.56
COL3A1P02461 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC5.31□□□□□ -1.56
COL3A1P02461 AC117532.1-201ENST00000514638 323 ntBASIC5.31□□□□□ -1.56
COL3A1P02461 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC5.31□□□□□ -1.56
COL3A1P02461 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC5.31□□□□□ -1.56
COL3A1P02461 OR10V3P-201ENST00000525712 725 ntBASIC5.31□□□□□ -1.56
COL3A1P02461 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC5.31□□□□□ -1.56
COL3A1P02461 AC091516.1-201ENST00000549191 703 ntBASIC5.31□□□□□ -1.56
COL3A1P02461 AC090888.1-201ENST00000561335 1141 ntBASIC5.31□□□□□ -1.56
COL3A1P02461 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC5.31□□□□□ -1.56
COL3A1P02461 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC5.31□□□□□ -1.56
COL3A1P02461 AC025627.2-201ENST00000576220 160 ntBASIC5.31□□□□□ -1.56
COL3A1P02461 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC5.31□□□□□ -1.56
COL3A1P02461 AL451044.1-201ENST00000604867 238 ntBASIC5.31□□□□□ -1.56
COL3A1P02461 AL357078.3-201ENST00000607528 618 ntBASIC5.31□□□□□ -1.56
COL3A1P02461 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL3A1P02461 AC017037.3-201ENST00000625016 472 ntBASIC5.31□□□□□ -1.56
COL3A1P02461 AL773545.4-201ENST00000637262 310 ntBASIC5.31□□□□□ -1.56
COL3A1P02461 AL513478.4-201ENST00000641636 310 ntBASIC5.31□□□□□ -1.56
COL3A1P02461 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL3A1P02461 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL3A1P02461 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL3A1P02461 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC5.31□□□□□ -1.56
COL3A1P02461 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL3A1P02461 AL355596.1-201ENST00000565399 3996 ntBASIC5.3□□□□□ -1.56
COL3A1P02461 INTS6-203ENST00000442263 15428 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
COL3A1P02461 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL3A1P02461 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC5.3□□□□□ -1.56
COL3A1P02461 MIR208A-201ENST00000362287 71 ntBASIC5.3□□□□□ -1.56
COL3A1P02461 U1.1-201ENST00000384101 164 ntBASIC5.3□□□□□ -1.56
COL3A1P02461 U8.11-201ENST00000384699 133 ntBASIC5.3□□□□□ -1.56
COL3A1P02461 U8.12-201ENST00000384701 133 ntBASIC5.3□□□□□ -1.56
COL3A1P02461 AL356131.1-201ENST00000405826 414 ntBASIC5.3□□□□□ -1.56
COL3A1P02461 AL355615.1-201ENST00000406187 641 ntBASIC5.3□□□□□ -1.56
COL3A1P02461 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC5.3□□□□□ -1.56
COL3A1P02461 MTCO1P54-201ENST00000430139 712 ntBASIC5.3□□□□□ -1.56
COL3A1P02461 AL445584.1-201ENST00000431451 330 ntBASIC5.3□□□□□ -1.56
COL3A1P02461 ZNF965P-201ENST00000432501 817 ntBASIC5.3□□□□□ -1.56
COL3A1P02461 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC5.3□□□□□ -1.56
COL3A1P02461 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC5.3□□□□□ -1.56
COL3A1P02461 AL358794.1-201ENST00000445689 381 ntBASIC5.3□□□□□ -1.56
COL3A1P02461 EXTL2P1-201ENST00000446218 416 ntBASIC5.3□□□□□ -1.56
COL3A1P02461 AL096829.2-201ENST00000446582 742 ntBASIC5.3□□□□□ -1.56
COL3A1P02461 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC5.3□□□□□ -1.56
COL3A1P02461 U8.18-201ENST00000459285 133 ntBASIC5.3□□□□□ -1.56
COL3A1P02461 RN7SL585P-201ENST00000470538 280 ntBASIC5.3□□□□□ -1.56
COL3A1P02461 AC010460.1-201ENST00000507087 466 ntBASIC5.3□□□□□ -1.56
COL3A1P02461 MTCO3P7-201ENST00000510008 774 ntBASIC5.3□□□□□ -1.56
COL3A1P02461 AC093755.1-201ENST00000512950 1023 ntBASIC5.3□□□□□ -1.56
COL3A1P02461 TCP11X3P-202ENST00000514289 1254 ntBASIC5.3□□□□□ -1.56
COL3A1P02461 RNA5SP179-201ENST00000517284 121 ntBASIC5.3□□□□□ -1.56
COL3A1P02461 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
COL3A1P02461 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC5.3□□□□□ -1.56
COL3A1P02461 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL3A1P02461 C1GALT1P1-201ENST00000548895 1089 ntBASIC5.3□□□□□ -1.56
COL3A1P02461 AC023161.2-201ENST00000551218 780 ntBASIC5.3□□□□□ -1.56
COL3A1P02461 AC012417.1-201ENST00000582307 1039 ntBASIC5.3□□□□□ -1.56
COL3A1P02461 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC5.3□□□□□ -1.56
COL3A1P02461 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL3A1P02461 FP236240.3-201ENST00000623061 327 ntBASIC5.3□□□□□ -1.56
COL3A1P02461 AC093648.1-201ENST00000623546 606 ntBASIC5.3□□□□□ -1.56
COL3A1P02461 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL3A1P02461 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL3A1P02461 SGO1P1-201ENST00000603525 1447 ntBASIC5.3□□□□□ -1.56
COL3A1P02461 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
COL3A1P02461 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC5.3□□□□□ -1.56
COL3A1P02461 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL3A1P02461 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL3A1P02461 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL3A1P02461 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL3A1P02461 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL3A1P02461 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC5.29□□□□□ -1.56
COL3A1P02461 RNA5SP52-201ENST00000362448 134 ntBASIC5.29□□□□□ -1.56
COL3A1P02461 SNORD35B-201ENST00000363660 87 ntBASIC5.29□□□□□ -1.56
COL3A1P02461 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL3A1P02461 MIR199A2-201ENST00000385289 110 ntBASIC5.29□□□□□ -1.56
COL3A1P02461 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
COL3A1P02461 RNU6-628P-201ENST00000410675 107 ntBASIC5.29□□□□□ -1.56
COL3A1P02461 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC5.29□□□□□ -1.56
COL3A1P02461 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC5.29□□□□□ -1.56
COL3A1P02461 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC5.29□□□□□ -1.56
COL3A1P02461 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC5.29□□□□□ -1.56
COL3A1P02461 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL3A1P02461 AC004022.1-201ENST00000447766 1066 ntBASIC5.29□□□□□ -1.56
COL3A1P02461 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC5.29□□□□□ -1.56
COL3A1P02461 C1DP3-201ENST00000455013 423 ntBASIC5.29□□□□□ -1.56
COL3A1P02461 RN7SL542P-201ENST00000467147 294 ntBASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 73.6 ms