Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 AC090071.1-201ENST00000507713 644 ntBASIC3.84□□□□□ -1.79
LSM1O15116 CDH12P4-201ENST00000517835 295 ntBASIC3.84□□□□□ -1.79
LSM1O15116 CDH12P3-201ENST00000517935 295 ntBASIC3.84□□□□□ -1.79
LSM1O15116 CDH12P1-201ENST00000518435 295 ntBASIC3.84□□□□□ -1.79
LSM1O15116 AC093331.1-201ENST00000521474 169 ntBASIC3.84□□□□□ -1.79
LSM1O15116 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC3.84□□□□□ -1.79
LSM1O15116 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC3.84□□□□□ -1.79
LSM1O15116 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC3.84□□□□□ -1.79
LSM1O15116 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
LSM1O15116 AL845331.3-202ENST00000562856 261 ntBASIC3.84□□□□□ -1.79
LSM1O15116 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC3.84□□□□□ -1.79
LSM1O15116 MIR4330-201ENST00000579077 105 ntBASIC3.84□□□□□ -1.79
LSM1O15116 AC007448.1-201ENST00000582714 234 ntBASIC3.84□□□□□ -1.79
LSM1O15116 PCNAP1-202ENST00000595299 752 ntBASIC3.84□□□□□ -1.79
LSM1O15116 AC113194.1-201ENST00000606037 500 ntBASIC3.84□□□□□ -1.79
LSM1O15116 AC006946.3-201ENST00000609791 756 ntBASIC3.84□□□□□ -1.79
LSM1O15116 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
LSM1O15116 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
LSM1O15116 MIR8059-201ENST00000620427 81 ntBASIC3.84□□□□□ -1.79
LSM1O15116 AC011944.2-201ENST00000624440 683 ntBASIC3.84□□□□□ -1.79
LSM1O15116 AC138649.5-201ENST00000637456 137 ntBASIC3.84□□□□□ -1.79
LSM1O15116 AF127577.6-201ENST00000623352 2191 ntBASIC3.84□□□□□ -1.79
LSM1O15116 AC073429.2-201ENST00000569694 1444 ntBASIC3.84□□□□□ -1.79
LSM1O15116 MTCO1P8-201ENST00000416914 1523 ntBASIC3.84□□□□□ -1.8
LSM1O15116 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
LSM1O15116 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC3.84□□□□□ -1.8
LSM1O15116 NCAPGP1-201ENST00000505112 1814 ntBASIC3.84□□□□□ -1.8
LSM1O15116 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC3.83□□□□□ -1.8
LSM1O15116 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
LSM1O15116 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.83□□□□□ -1.8
LSM1O15116 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
LSM1O15116 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
LSM1O15116 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
LSM1O15116 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC3.83□□□□□ -1.8
LSM1O15116 RNU6-98P-201ENST00000384173 107 ntBASIC3.83□□□□□ -1.8
LSM1O15116 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
LSM1O15116 RNU11-4P-201ENST00000391149 133 ntBASIC3.83□□□□□ -1.8
LSM1O15116 RN7SKP33-201ENST00000410942 340 ntBASIC3.83□□□□□ -1.8
LSM1O15116 AC004987.3-201ENST00000413879 771 ntBASIC3.83□□□□□ -1.8
LSM1O15116 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC3.83□□□□□ -1.8
LSM1O15116 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.83□□□□□ -1.8
LSM1O15116 AL592293.2-201ENST00000422292 996 ntBASIC3.83□□□□□ -1.8
LSM1O15116 RFESDP1-201ENST00000422350 461 ntBASIC3.83□□□□□ -1.8
LSM1O15116 FAR2P4-202ENST00000425399 584 ntBASIC3.83□□□□□ -1.8
LSM1O15116 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.83□□□□□ -1.8
LSM1O15116 MTCYBP31-201ENST00000438855 1122 ntBASIC3.83□□□□□ -1.8
LSM1O15116 CYCSP42-201ENST00000450823 238 ntBASIC3.83□□□□□ -1.8
LSM1O15116 RPS20P32-201ENST00000456044 356 ntBASIC3.83□□□□□ -1.8
LSM1O15116 RPL37P3-201ENST00000456825 293 ntBASIC3.83□□□□□ -1.8
LSM1O15116 HMGB3P30-201ENST00000457863 606 ntBASIC3.83□□□□□ -1.8
LSM1O15116 UQCRHP4-201ENST00000471686 272 ntBASIC3.83□□□□□ -1.8
LSM1O15116 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC3.83□□□□□ -1.8
LSM1O15116 AC090543.1-201ENST00000492168 485 ntBASIC3.83□□□□□ -1.8
LSM1O15116 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.83□□□□□ -1.8
LSM1O15116 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC3.83□□□□□ -1.8
LSM1O15116 AC010342.1-201ENST00000514047 877 ntBASIC3.83□□□□□ -1.8
LSM1O15116 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC3.83□□□□□ -1.8
LSM1O15116 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
LSM1O15116 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC3.83□□□□□ -1.8
LSM1O15116 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC3.83□□□□□ -1.8
LSM1O15116 PTP4A1P6-201ENST00000531034 478 ntBASIC3.83□□□□□ -1.8
LSM1O15116 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC3.83□□□□□ -1.8
LSM1O15116 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC3.83□□□□□ -1.8
LSM1O15116 AC025260.1-201ENST00000548858 430 ntBASIC3.83□□□□□ -1.8
LSM1O15116 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC3.83□□□□□ -1.8
LSM1O15116 AC105429.2-201ENST00000610567 517 ntBASIC3.83□□□□□ -1.8
LSM1O15116 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC3.83□□□□□ -1.8
LSM1O15116 AL450489.1-201ENST00000612071 468 ntBASIC3.83□□□□□ -1.8
LSM1O15116 AL591424.2-201ENST00000617023 128 ntBASIC3.83□□□□□ -1.8
LSM1O15116 XIST_intron.1-201ENST00000619444 68 ntBASIC3.83□□□□□ -1.8
LSM1O15116 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC3.83□□□□□ -1.8
LSM1O15116 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.83□□□□□ -1.8
LSM1O15116 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
LSM1O15116 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC3.83□□□□□ -1.8
LSM1O15116 RIOK3P1-201ENST00000418778 1528 ntBASIC3.83□□□□□ -1.8
LSM1O15116 FTO-203ENST00000460382 1517 ntTSL 5 BASIC3.83□□□□□ -1.8
LSM1O15116 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.83□□□□□ -1.8
LSM1O15116 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC3.83□□□□□ -1.8
LSM1O15116 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
LSM1O15116 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
LSM1O15116 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
LSM1O15116 AC091152.2-201ENST00000591628 2569 ntBASIC3.82□□□□□ -1.8
LSM1O15116 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
LSM1O15116 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC3.82□□□□□ -1.8
LSM1O15116 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
LSM1O15116 ZNF542P-204ENST00000482727 1305 ntBASIC3.82□□□□□ -1.8
LSM1O15116 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC3.82□□□□□ -1.8
LSM1O15116 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
LSM1O15116 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
LSM1O15116 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC3.82□□□□□ -1.8
LSM1O15116 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
LSM1O15116 SNORA27.3-201ENST00000364937 134 ntBASIC3.82□□□□□ -1.8
LSM1O15116 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
LSM1O15116 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC3.82□□□□□ -1.8
LSM1O15116 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
LSM1O15116 HMGB1P13-201ENST00000406019 642 ntBASIC3.82□□□□□ -1.8
LSM1O15116 RPL37P18-201ENST00000411602 243 ntBASIC3.82□□□□□ -1.8
LSM1O15116 TPT1P2-201ENST00000413105 503 ntBASIC3.82□□□□□ -1.8
LSM1O15116 RPL31P45-201ENST00000419532 356 ntBASIC3.82□□□□□ -1.8
LSM1O15116 NPM1P34-201ENST00000428821 893 ntBASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 96.1 ms