Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 TCP11X1-202ENST00000622971 1372 ntBASIC5.16□□□□□ -1.58
TDP1Q9NUW8 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
TDP1Q9NUW8 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
TDP1Q9NUW8 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
TDP1Q9NUW8 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
TDP1Q9NUW8 MIR133A2-201ENST00000347538 102 ntBASIC5.16□□□□□ -1.58
TDP1Q9NUW8 RNU6-251P-201ENST00000363235 104 ntBASIC5.16□□□□□ -1.58
TDP1Q9NUW8 RNU6-374P-201ENST00000364146 108 ntBASIC5.16□□□□□ -1.58
TDP1Q9NUW8 Y_RNA.302-201ENST00000364997 102 ntBASIC5.16□□□□□ -1.58
TDP1Q9NUW8 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC5.16□□□□□ -1.58
TDP1Q9NUW8 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
TDP1Q9NUW8 OR5H15-201ENST00000383696 930 ntBASIC5.16□□□□□ -1.58
TDP1Q9NUW8 RNU6-192P-201ENST00000391253 100 ntBASIC5.16□□□□□ -1.58
TDP1Q9NUW8 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC5.16□□□□□ -1.58
TDP1Q9NUW8 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
TDP1Q9NUW8 PRRC2CP1-201ENST00000404428 159 ntBASIC5.16□□□□□ -1.58
TDP1Q9NUW8 RPS16P5-201ENST00000406501 404 ntBASIC5.16□□□□□ -1.58
TDP1Q9NUW8 RN7SKP142-201ENST00000411236 328 ntBASIC5.16□□□□□ -1.58
TDP1Q9NUW8 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC5.16□□□□□ -1.58
TDP1Q9NUW8 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC5.16□□□□□ -1.58
TDP1Q9NUW8 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC5.16□□□□□ -1.58
TDP1Q9NUW8 RPS27AP6-201ENST00000427962 448 ntBASIC5.16□□□□□ -1.58
TDP1Q9NUW8 NPM1P24-201ENST00000428039 894 ntBASIC5.16□□□□□ -1.58
TDP1Q9NUW8 RPL37P1-201ENST00000432310 284 ntBASIC5.16□□□□□ -1.58
TDP1Q9NUW8 AC010881.1-201ENST00000433830 235 ntBASIC5.16□□□□□ -1.58
TDP1Q9NUW8 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC5.16□□□□□ -1.58
TDP1Q9NUW8 NPM1P18-201ENST00000434232 732 ntBASIC5.16□□□□□ -1.58
TDP1Q9NUW8 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC5.16□□□□□ -1.58
TDP1Q9NUW8 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC5.16□□□□□ -1.58
TDP1Q9NUW8 MUPP-201ENST00000438111 566 ntBASIC5.16□□□□□ -1.58
TDP1Q9NUW8 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC5.16□□□□□ -1.58
TDP1Q9NUW8 OR1H1P-201ENST00000448731 937 ntBASIC5.16□□□□□ -1.58
TDP1Q9NUW8 SLC25A18P1-201ENST00000449385 454 ntBASIC5.16□□□□□ -1.58
TDP1Q9NUW8 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC5.16□□□□□ -1.58
TDP1Q9NUW8 AC108463.1-201ENST00000450258 347 ntBASIC5.16□□□□□ -1.58
TDP1Q9NUW8 RPL36AP33-201ENST00000450395 310 ntBASIC5.16□□□□□ -1.58
TDP1Q9NUW8 GAPDHP14-201ENST00000450472 937 ntBASIC5.16□□□□□ -1.58
TDP1Q9NUW8 SLC31A1P1-201ENST00000451221 567 ntBASIC5.16□□□□□ -1.58
TDP1Q9NUW8 OR52E3P-201ENST00000452083 936 ntBASIC5.16□□□□□ -1.58
TDP1Q9NUW8 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC5.16□□□□□ -1.58
TDP1Q9NUW8 RPL18AP17-201ENST00000455326 198 ntBASIC5.16□□□□□ -1.58
TDP1Q9NUW8 CEACAMP10-202ENST00000495431 496 ntBASIC5.16□□□□□ -1.58
TDP1Q9NUW8 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC5.16□□□□□ -1.58
TDP1Q9NUW8 AC108078.3-201ENST00000502633 489 ntBASIC5.16□□□□□ -1.58
TDP1Q9NUW8 OR51K1P-201ENST00000510214 950 ntBASIC5.16□□□□□ -1.58
TDP1Q9NUW8 AC022447.1-201ENST00000515358 464 ntBASIC5.16□□□□□ -1.58
TDP1Q9NUW8 GSTP1P1-201ENST00000548078 319 ntBASIC5.16□□□□□ -1.58
TDP1Q9NUW8 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC5.16□□□□□ -1.58
TDP1Q9NUW8 AL391156.1-201ENST00000554965 554 ntBASIC5.16□□□□□ -1.58
TDP1Q9NUW8 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC5.16□□□□□ -1.58
TDP1Q9NUW8 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC5.16□□□□□ -1.58
TDP1Q9NUW8 AC008759.1-201ENST00000589783 983 ntBASIC5.16□□□□□ -1.58
TDP1Q9NUW8 AL512782.1-201ENST00000603093 364 ntBASIC5.16□□□□□ -1.58
TDP1Q9NUW8 AL022394.1-201ENST00000606979 292 ntBASIC5.16□□□□□ -1.58
TDP1Q9NUW8 AC106028.5-201ENST00000610332 395 ntBASIC5.16□□□□□ -1.58
TDP1Q9NUW8 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC5.16□□□□□ -1.58
TDP1Q9NUW8 AC068792.1-201ENST00000621354 417 ntBASIC5.16□□□□□ -1.58
TDP1Q9NUW8 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC5.16□□□□□ -1.58
TDP1Q9NUW8 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
TDP1Q9NUW8 AC025125.1-201ENST00000624743 1922 ntBASIC5.16□□□□□ -1.58
TDP1Q9NUW8 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC5.16□□□□□ -1.58
TDP1Q9NUW8 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
TDP1Q9NUW8 OR5BR1P-201ENST00000524992 1330 ntBASIC5.16□□□□□ -1.58
TDP1Q9NUW8 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
TDP1Q9NUW8 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
TDP1Q9NUW8 AC010329.2-201ENST00000595195 2737 ntBASIC5.16□□□□□ -1.58
TDP1Q9NUW8 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
TDP1Q9NUW8 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
TDP1Q9NUW8 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC5.16□□□□□ -1.58
TDP1Q9NUW8 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
TDP1Q9NUW8 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC5.15□□□□□ -1.58
TDP1Q9NUW8 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC5.15□□□□□ -1.58
TDP1Q9NUW8 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
TDP1Q9NUW8 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.58
TDP1Q9NUW8 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC5.15□□□□□ -1.58
TDP1Q9NUW8 AL022322.2-201ENST00000624072 20397 ntBASIC5.15□□□□□ -1.58
TDP1Q9NUW8 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
TDP1Q9NUW8 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC5.15□□□□□ -1.58
TDP1Q9NUW8 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC5.15□□□□□ -1.58
TDP1Q9NUW8 AC090017.1-201ENST00000548612 1779 ntBASIC5.15□□□□□ -1.58
TDP1Q9NUW8 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
TDP1Q9NUW8 SAMMSON-213ENST00000641336 1521 ntBASIC5.15□□□□□ -1.58
TDP1Q9NUW8 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC5.15□□□□□ -1.58
TDP1Q9NUW8 AC079741.1-201ENST00000321498 212 ntBASIC5.15□□□□□ -1.59
TDP1Q9NUW8 RNA5SP191-201ENST00000362585 102 ntBASIC5.15□□□□□ -1.59
TDP1Q9NUW8 RNU6-660P-201ENST00000364566 109 ntBASIC5.15□□□□□ -1.59
TDP1Q9NUW8 RNU6-398P-201ENST00000384143 109 ntBASIC5.15□□□□□ -1.59
TDP1Q9NUW8 MIR141-201ENST00000384975 95 ntBASIC5.15□□□□□ -1.59
TDP1Q9NUW8 AC136624.1-201ENST00000400791 413 ntBASIC5.15□□□□□ -1.59
TDP1Q9NUW8 AL035079.1-201ENST00000405210 287 ntBASIC5.15□□□□□ -1.59
TDP1Q9NUW8 Y_RNA.599-201ENST00000410489 109 ntBASIC5.15□□□□□ -1.59
TDP1Q9NUW8 PRELID3BP11-201ENST00000414230 479 ntBASIC5.15□□□□□ -1.59
TDP1Q9NUW8 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
TDP1Q9NUW8 MTCYBP38-201ENST00000417160 1123 ntBASIC5.15□□□□□ -1.59
TDP1Q9NUW8 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC5.15□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms