Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC4.13□□□□□ -1.75
VPS39Q96JC1 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
VPS39Q96JC1 AL353692.2-201ENST00000407054 335 ntBASIC4.13□□□□□ -1.75
VPS39Q96JC1 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC4.13□□□□□ -1.75
VPS39Q96JC1 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.13□□□□□ -1.75
VPS39Q96JC1 AC023128.2-201ENST00000420880 1223 ntBASIC4.13□□□□□ -1.75
VPS39Q96JC1 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC4.13□□□□□ -1.75
VPS39Q96JC1 DNAJC19P7-201ENST00000428811 344 ntBASIC4.13□□□□□ -1.75
VPS39Q96JC1 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC4.13□□□□□ -1.75
VPS39Q96JC1 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC4.13□□□□□ -1.75
VPS39Q96JC1 TPTE2P3-201ENST00000441562 1189 ntBASIC4.13□□□□□ -1.75
VPS39Q96JC1 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC4.13□□□□□ -1.75
VPS39Q96JC1 AC006326.1-201ENST00000445465 787 ntBASIC4.13□□□□□ -1.75
VPS39Q96JC1 AL590399.6-201ENST00000446396 307 ntBASIC4.13□□□□□ -1.75
VPS39Q96JC1 AC017099.1-201ENST00000448261 1028 ntBASIC4.13□□□□□ -1.75
VPS39Q96JC1 AL451050.1-201ENST00000450126 415 ntBASIC4.13□□□□□ -1.75
VPS39Q96JC1 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
VPS39Q96JC1 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC4.13□□□□□ -1.75
VPS39Q96JC1 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC4.13□□□□□ -1.75
VPS39Q96JC1 AC007688.1-201ENST00000475592 759 ntBASIC4.13□□□□□ -1.75
VPS39Q96JC1 TMED11P-201ENST00000479478 690 ntBASIC4.13□□□□□ -1.75
VPS39Q96JC1 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC4.13□□□□□ -1.75
VPS39Q96JC1 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC4.13□□□□□ -1.75
VPS39Q96JC1 AF213884.1-201ENST00000488102 463 ntBASIC4.13□□□□□ -1.75
VPS39Q96JC1 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC4.13□□□□□ -1.75
VPS39Q96JC1 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC4.13□□□□□ -1.75
VPS39Q96JC1 AC008958.1-201ENST00000511047 682 ntBASIC4.13□□□□□ -1.75
VPS39Q96JC1 IGLVIV-53-201ENST00000520107 367 ntBASIC4.13□□□□□ -1.75
VPS39Q96JC1 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC4.13□□□□□ -1.75
VPS39Q96JC1 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC4.13□□□□□ -1.75
VPS39Q96JC1 AC105233.3-201ENST00000531125 744 ntBASIC4.13□□□□□ -1.75
VPS39Q96JC1 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC4.13□□□□□ -1.75
VPS39Q96JC1 CKS1BP1-201ENST00000555221 240 ntBASIC4.13□□□□□ -1.75
VPS39Q96JC1 TVP23BP1-201ENST00000557500 617 ntBASIC4.13□□□□□ -1.75
VPS39Q96JC1 AC025918.2-201ENST00000558683 763 ntBASIC4.13□□□□□ -1.75
VPS39Q96JC1 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC4.13□□□□□ -1.75
VPS39Q96JC1 AC022655.2-201ENST00000577280 318 ntBASIC4.13□□□□□ -1.75
VPS39Q96JC1 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC4.13□□□□□ -1.75
VPS39Q96JC1 MIR5096-201ENST00000583713 70 ntBASIC4.13□□□□□ -1.75
VPS39Q96JC1 AC010928.3-201ENST00000587712 541 ntBASIC4.13□□□□□ -1.75
VPS39Q96JC1 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC4.13□□□□□ -1.75
VPS39Q96JC1 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC4.13□□□□□ -1.75
VPS39Q96JC1 AC125494.3-201ENST00000602759 455 ntBASIC4.13□□□□□ -1.75
VPS39Q96JC1 AC104662.1-201ENST00000604448 511 ntBASIC4.13□□□□□ -1.75
VPS39Q96JC1 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC4.13□□□□□ -1.75
VPS39Q96JC1 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC4.13□□□□□ -1.75
VPS39Q96JC1 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
VPS39Q96JC1 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC4.13□□□□□ -1.75
VPS39Q96JC1 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
VPS39Q96JC1 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.13□□□□□ -1.75
VPS39Q96JC1 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
VPS39Q96JC1 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
VPS39Q96JC1 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
VPS39Q96JC1 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
VPS39Q96JC1 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4.12□□□□□ -1.75
VPS39Q96JC1 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
VPS39Q96JC1 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC4.12□□□□□ -1.75
VPS39Q96JC1 RNU6-252P-201ENST00000363232 107 ntBASIC4.12□□□□□ -1.75
VPS39Q96JC1 RNA5SP447-201ENST00000363749 119 ntBASIC4.12□□□□□ -1.75
VPS39Q96JC1 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
VPS39Q96JC1 ENSAP1-201ENST00000392855 326 ntBASIC4.12□□□□□ -1.75
VPS39Q96JC1 HMGB3P18-201ENST00000406327 590 ntBASIC4.12□□□□□ -1.75
VPS39Q96JC1 RNU4-25P-201ENST00000410569 230 ntBASIC4.12□□□□□ -1.75
VPS39Q96JC1 RNU2-37P-201ENST00000410695 177 ntBASIC4.12□□□□□ -1.75
VPS39Q96JC1 ELOCP19-201ENST00000411919 318 ntBASIC4.12□□□□□ -1.75
VPS39Q96JC1 AC011933.1-201ENST00000413334 321 ntBASIC4.12□□□□□ -1.75
VPS39Q96JC1 TATDN1P1-201ENST00000414123 891 ntBASIC4.12□□□□□ -1.75
VPS39Q96JC1 ARL2BPP3-201ENST00000421226 480 ntBASIC4.12□□□□□ -1.75
VPS39Q96JC1 AC009480.2-201ENST00000422916 432 ntBASIC4.12□□□□□ -1.75
VPS39Q96JC1 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC4.12□□□□□ -1.75
VPS39Q96JC1 FAR1P1-201ENST00000427163 934 ntBASIC4.12□□□□□ -1.75
VPS39Q96JC1 AC068287.1-201ENST00000430283 295 ntBASIC4.12□□□□□ -1.75
VPS39Q96JC1 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC4.12□□□□□ -1.75
VPS39Q96JC1 Z77249.1-201ENST00000444622 1175 ntBASIC4.12□□□□□ -1.75
VPS39Q96JC1 TPT1P13-201ENST00000449760 499 ntBASIC4.12□□□□□ -1.75
VPS39Q96JC1 MRPL35P4-201ENST00000453682 566 ntBASIC4.12□□□□□ -1.75
VPS39Q96JC1 AC116533.1-201ENST00000459748 321 ntBASIC4.12□□□□□ -1.75
VPS39Q96JC1 AC073522.1-201ENST00000483312 377 ntBASIC4.12□□□□□ -1.75
VPS39Q96JC1 RPS26P15-201ENST00000488067 348 ntBASIC4.12□□□□□ -1.75
VPS39Q96JC1 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC4.12□□□□□ -1.75
VPS39Q96JC1 IGBP1P5-201ENST00000507524 1000 ntBASIC4.12□□□□□ -1.75
VPS39Q96JC1 AC093824.1-201ENST00000508796 343 ntBASIC4.12□□□□□ -1.75
VPS39Q96JC1 NDUFB4P9-201ENST00000511646 388 ntBASIC4.12□□□□□ -1.75
VPS39Q96JC1 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC4.12□□□□□ -1.75
VPS39Q96JC1 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
VPS39Q96JC1 MAL2-205ENST00000521048 575 ntTSL 4 BASIC4.12□□□□□ -1.75
VPS39Q96JC1 AC093014.1-201ENST00000548926 724 ntBASIC4.12□□□□□ -1.75
VPS39Q96JC1 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC4.12□□□□□ -1.75
VPS39Q96JC1 AC233266.2-201ENST00000567067 528 ntBASIC4.12□□□□□ -1.75
VPS39Q96JC1 AC079171.1-201ENST00000568788 914 ntBASIC4.12□□□□□ -1.75
VPS39Q96JC1 AC040174.2-201ENST00000602701 465 ntBASIC4.12□□□□□ -1.75
VPS39Q96JC1 AC135178.6-201ENST00000605314 398 ntBASIC4.12□□□□□ -1.75
VPS39Q96JC1 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC4.12□□□□□ -1.75
VPS39Q96JC1 STMN1P1-201ENST00000617809 440 ntBASIC4.12□□□□□ -1.75
VPS39Q96JC1 AC024595.1-201ENST00000623088 387 ntBASIC4.12□□□□□ -1.75
VPS39Q96JC1 AC073592.7-201ENST00000623659 507 ntBASIC4.12□□□□□ -1.75
VPS39Q96JC1 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.12□□□□□ -1.75
VPS39Q96JC1 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC4.12□□□□□ -1.75
VPS39Q96JC1 AC104446.1-201ENST00000613728 1321 ntBASIC4.12□□□□□ -1.75
VPS39Q96JC1 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 94.7 ms