Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC3.87□□□□□ -1.79
CDX1P47902 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
CDX1P47902 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC3.87□□□□□ -1.79
CDX1P47902 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC3.87□□□□□ -1.79
CDX1P47902 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC3.87□□□□□ -1.79
CDX1P47902 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
CDX1P47902 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
CDX1P47902 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC3.87□□□□□ -1.79
CDX1P47902 MTND4P10-201ENST00000446199 1363 ntBASIC3.87□□□□□ -1.79
CDX1P47902 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
CDX1P47902 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
CDX1P47902 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
CDX1P47902 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
CDX1P47902 AC099654.2-201ENST00000433031 1980 ntBASIC3.86□□□□□ -1.79
CDX1P47902 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
CDX1P47902 SNORA72.3-201ENST00000365074 132 ntBASIC3.86□□□□□ -1.79
CDX1P47902 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC3.86□□□□□ -1.79
CDX1P47902 RNU6-356P-201ENST00000384140 107 ntBASIC3.86□□□□□ -1.79
CDX1P47902 Y_RNA.472-201ENST00000384322 102 ntBASIC3.86□□□□□ -1.79
CDX1P47902 RNU6-921P-201ENST00000384361 107 ntBASIC3.86□□□□□ -1.79
CDX1P47902 AL161909.1-201ENST00000397390 712 ntBASIC3.86□□□□□ -1.79
CDX1P47902 AC136624.1-201ENST00000400791 413 ntBASIC3.86□□□□□ -1.79
CDX1P47902 MTND4P22-201ENST00000413116 1169 ntBASIC3.86□□□□□ -1.79
CDX1P47902 AF186996.5-201ENST00000418098 904 ntBASIC3.86□□□□□ -1.79
CDX1P47902 AL391219.1-201ENST00000422570 483 ntBASIC3.86□□□□□ -1.79
CDX1P47902 MOB1AP1-201ENST00000430903 535 ntBASIC3.86□□□□□ -1.79
CDX1P47902 AC005345.1-201ENST00000431868 217 ntBASIC3.86□□□□□ -1.79
CDX1P47902 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC3.86□□□□□ -1.79
CDX1P47902 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC3.86□□□□□ -1.79
CDX1P47902 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC3.86□□□□□ -1.79
CDX1P47902 RPL7P11-201ENST00000437586 658 ntBASIC3.86□□□□□ -1.79
CDX1P47902 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC3.86□□□□□ -1.79
CDX1P47902 AC241584.1-201ENST00000438469 1241 ntBASIC3.86□□□□□ -1.79
CDX1P47902 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC3.86□□□□□ -1.79
CDX1P47902 SLC25A18P1-201ENST00000449385 454 ntBASIC3.86□□□□□ -1.79
CDX1P47902 PPIAP3-201ENST00000450588 505 ntBASIC3.86□□□□□ -1.79
CDX1P47902 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC3.86□□□□□ -1.79
CDX1P47902 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC3.86□□□□□ -1.79
CDX1P47902 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC3.86□□□□□ -1.79
CDX1P47902 RPL23AP65-201ENST00000475608 468 ntBASIC3.86□□□□□ -1.79
CDX1P47902 AC083982.1-201ENST00000485679 344 ntBASIC3.86□□□□□ -1.79
CDX1P47902 AC012170.1-201ENST00000495139 359 ntBASIC3.86□□□□□ -1.79
CDX1P47902 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC3.86□□□□□ -1.79
CDX1P47902 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC3.86□□□□□ -1.79
CDX1P47902 AC113347.3-201ENST00000509113 148 ntBASIC3.86□□□□□ -1.79
CDX1P47902 PTGES3P3-201ENST00000511479 482 ntBASIC3.86□□□□□ -1.79
CDX1P47902 BTF3P13-201ENST00000513224 490 ntBASIC3.86□□□□□ -1.79
CDX1P47902 CDH12P4-201ENST00000517835 295 ntBASIC3.86□□□□□ -1.79
CDX1P47902 CDH12P3-201ENST00000517935 295 ntBASIC3.86□□□□□ -1.79
CDX1P47902 CDH12P1-201ENST00000518435 295 ntBASIC3.86□□□□□ -1.79
CDX1P47902 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC3.86□□□□□ -1.79
CDX1P47902 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC3.86□□□□□ -1.79
CDX1P47902 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC3.86□□□□□ -1.79
CDX1P47902 MIR4480-201ENST00000582492 71 ntBASIC3.86□□□□□ -1.79
CDX1P47902 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC3.86□□□□□ -1.79
CDX1P47902 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC3.86□□□□□ -1.79
CDX1P47902 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC3.86□□□□□ -1.79
CDX1P47902 RPP40P2-201ENST00000603596 712 ntBASIC3.86□□□□□ -1.79
CDX1P47902 AC021749.1-201ENST00000604322 607 ntBASIC3.86□□□□□ -1.79
CDX1P47902 OR6R2P-201ENST00000609216 300 ntBASIC3.86□□□□□ -1.79
CDX1P47902 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC3.86□□□□□ -1.79
CDX1P47902 CR381572.2-201ENST00000624852 397 ntBASIC3.86□□□□□ -1.79
CDX1P47902 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC3.86□□□□□ -1.79
CDX1P47902 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC3.86□□□□□ -1.79
CDX1P47902 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC3.86□□□□□ -1.79
CDX1P47902 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC3.86□□□□□ -1.79
CDX1P47902 SDAD1P1-202ENST00000524156 2051 ntBASIC3.86□□□□□ -1.79
CDX1P47902 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
CDX1P47902 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC3.86□□□□□ -1.79
CDX1P47902 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
CDX1P47902 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
CDX1P47902 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC3.86□□□□□ -1.79
CDX1P47902 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC3.86□□□□□ -1.79
CDX1P47902 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
CDX1P47902 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
CDX1P47902 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC3.86□□□□□ -1.79
CDX1P47902 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
CDX1P47902 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
CDX1P47902 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC3.86□□□□□ -1.79
CDX1P47902 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC3.85□□□□□ -1.79
CDX1P47902 AC117529.2-201ENST00000512159 2068 ntBASIC3.85□□□□□ -1.79
CDX1P47902 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC3.85□□□□□ -1.79
CDX1P47902 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
CDX1P47902 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC3.85□□□□□ -1.79
CDX1P47902 AP005901.5-201ENST00000545779 1796 ntBASIC3.85□□□□□ -1.79
CDX1P47902 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC3.85□□□□□ -1.79
CDX1P47902 AC103591.2-201ENST00000265259 766 ntBASIC3.85□□□□□ -1.79
CDX1P47902 GNAS-202ENST00000306090 477 ntTSL 5 BASIC3.85□□□□□ -1.79
CDX1P47902 snoZ40.1-201ENST00000364540 72 ntBASIC3.85□□□□□ -1.79
CDX1P47902 SNORA70.10-201ENST00000384515 134 ntBASIC3.85□□□□□ -1.79
CDX1P47902 SNORD65.1-201ENST00000390889 71 ntBASIC3.85□□□□□ -1.79
CDX1P47902 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
CDX1P47902 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC3.85□□□□□ -1.79
CDX1P47902 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC3.85□□□□□ -1.79
CDX1P47902 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC3.85□□□□□ -1.79
CDX1P47902 MTCO3P1-205ENST00000422088 832 ntBASIC3.85□□□□□ -1.79
CDX1P47902 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC3.85□□□□□ -1.79
CDX1P47902 IGKV1OR9-1-201ENST00000424370 284 ntBASIC3.85□□□□□ -1.79
CDX1P47902 AC114973.1-201ENST00000429057 632 ntBASIC3.85□□□□□ -1.79
CDX1P47902 USP9YP9-201ENST00000429406 715 ntBASIC3.85□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms