Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AL713922.2-201ENST00000619384 716 ntBASIC4.29□□□□□ -1.72
SCN4AP35499 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
SCN4AP35499 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
SCN4AP35499 AC139713.2-215ENST00000641428 5037 ntBASIC4.29□□□□□ -1.72
SCN4AP35499 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC4.29□□□□□ -1.72
SCN4AP35499 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
SCN4AP35499 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
SCN4AP35499 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC4.28□□□□□ -1.72
SCN4AP35499 IARS-201ENST00000375627 697 ntTSL 3 BASIC4.28□□□□□ -1.72
SCN4AP35499 RN7SKP111-201ENST00000410349 271 ntBASIC4.28□□□□□ -1.72
SCN4AP35499 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC4.28□□□□□ -1.72
SCN4AP35499 OR1AA1P-201ENST00000419597 916 ntBASIC4.28□□□□□ -1.72
SCN4AP35499 OSTCP5-201ENST00000425293 453 ntBASIC4.28□□□□□ -1.72
SCN4AP35499 AL589765.3-201ENST00000446084 462 ntBASIC4.28□□□□□ -1.72
SCN4AP35499 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC4.28□□□□□ -1.72
SCN4AP35499 AP001992.1-205ENST00000462248 379 ntBASIC4.28□□□□□ -1.72
SCN4AP35499 PDCD10-207ENST00000471885 764 ntTSL 5 BASIC4.28□□□□□ -1.72
SCN4AP35499 AC007333.2-201ENST00000569998 559 ntTSL 4 BASIC4.28□□□□□ -1.72
SCN4AP35499 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC4.28□□□□□ -1.72
SCN4AP35499 AL390816.3-201ENST00000604527 1066 ntBASIC4.28□□□□□ -1.72
SCN4AP35499 U4.6-201ENST00000621618 127 ntBASIC4.28□□□□□ -1.72
SCN4AP35499 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.28□□□□□ -1.72
SCN4AP35499 AC026422.1-201ENST00000623961 452 ntBASIC4.28□□□□□ -1.72
SCN4AP35499 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.28□□□□□ -1.72
SCN4AP35499 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.28□□□□□ -1.72
SCN4AP35499 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC4.28□□□□□ -1.72
SCN4AP35499 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC4.28□□□□□ -1.72
SCN4AP35499 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.28□□□□□ -1.72
SCN4AP35499 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
SCN4AP35499 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC4.28□□□□□ -1.72
SCN4AP35499 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4.28□□□□□ -1.72
SCN4AP35499 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
SCN4AP35499 RNU6-249P-201ENST00000363016 102 ntBASIC4.28□□□□□ -1.72
SCN4AP35499 RNU1-140P-201ENST00000365040 165 ntBASIC4.28□□□□□ -1.72
SCN4AP35499 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC4.28□□□□□ -1.72
SCN4AP35499 CCNE2-202ENST00000396133 1361 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
SCN4AP35499 NACAP7-201ENST00000407371 609 ntBASIC4.28□□□□□ -1.72
SCN4AP35499 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC4.28□□□□□ -1.72
SCN4AP35499 FTLP19-201ENST00000433300 394 ntBASIC4.28□□□□□ -1.72
SCN4AP35499 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC4.28□□□□□ -1.72
SCN4AP35499 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC4.28□□□□□ -1.72
SCN4AP35499 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC4.28□□□□□ -1.72
SCN4AP35499 CCRL1P1-201ENST00000449542 1053 ntBASIC4.28□□□□□ -1.72
SCN4AP35499 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
SCN4AP35499 PTGES3P3-201ENST00000511479 482 ntBASIC4.28□□□□□ -1.72
SCN4AP35499 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.28□□□□□ -1.72
SCN4AP35499 AC006023.1-201ENST00000603944 259 ntBASIC4.28□□□□□ -1.72
SCN4AP35499 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.28□□□□□ -1.72
SCN4AP35499 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
SCN4AP35499 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
SCN4AP35499 AC119744.1-201ENST00000454746 1715 ntBASIC4.27□□□□□ -1.73
SCN4AP35499 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
SCN4AP35499 AC024341.1-201ENST00000526444 1552 ntBASIC4.27□□□□□ -1.73
SCN4AP35499 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
SCN4AP35499 AL139095.1-201ENST00000404326 391 ntBASIC4.27□□□□□ -1.73
SCN4AP35499 AL024507.1-201ENST00000412741 274 ntBASIC4.27□□□□□ -1.73
SCN4AP35499 TRGV5P-201ENST00000419915 354 ntBASIC4.27□□□□□ -1.73
SCN4AP35499 YWHAQP9-201ENST00000445891 512 ntBASIC4.27□□□□□ -1.73
SCN4AP35499 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC4.27□□□□□ -1.73
SCN4AP35499 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC4.27□□□□□ -1.73
SCN4AP35499 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC4.27□□□□□ -1.73
SCN4AP35499 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC4.27□□□□□ -1.73
SCN4AP35499 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC4.27□□□□□ -1.73
SCN4AP35499 MIR4276-201ENST00000584832 70 ntBASIC4.27□□□□□ -1.73
SCN4AP35499 ACTR3BP1-201ENST00000605584 1247 ntBASIC4.27□□□□□ -1.73
SCN4AP35499 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC4.27□□□□□ -1.73
SCN4AP35499 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC4.27□□□□□ -1.73
SCN4AP35499 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.27□□□□□ -1.73
SCN4AP35499 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
SCN4AP35499 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC4.27□□□□□ -1.73
SCN4AP35499 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC4.27□□□□□ -1.73
SCN4AP35499 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC4.27□□□□□ -1.73
SCN4AP35499 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
SCN4AP35499 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
SCN4AP35499 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
SCN4AP35499 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
SCN4AP35499 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC4.26□□□□□ -1.73
SCN4AP35499 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC4.26□□□□□ -1.73
SCN4AP35499 AL357075.1-201ENST00000404107 726 ntBASIC4.26□□□□□ -1.73
SCN4AP35499 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC4.26□□□□□ -1.73
SCN4AP35499 VN1R25P-201ENST00000443385 738 ntBASIC4.26□□□□□ -1.73
SCN4AP35499 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
SCN4AP35499 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC4.26□□□□□ -1.73
SCN4AP35499 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC4.26□□□□□ -1.73
SCN4AP35499 RN7SL504P-201ENST00000494496 287 ntBASIC4.26□□□□□ -1.73
SCN4AP35499 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC4.26□□□□□ -1.73
SCN4AP35499 FTH1P24-201ENST00000503502 462 ntBASIC4.26□□□□□ -1.73
SCN4AP35499 LINC02374-201ENST00000503637 743 ntTSL 3 BASIC4.26□□□□□ -1.73
SCN4AP35499 AC109458.1-201ENST00000508858 316 ntBASIC4.26□□□□□ -1.73
SCN4AP35499 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC4.26□□□□□ -1.73
SCN4AP35499 LDHBP3-201ENST00000514909 822 ntBASIC4.26□□□□□ -1.73
SCN4AP35499 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC4.26□□□□□ -1.73
SCN4AP35499 AC023161.2-201ENST00000551218 780 ntBASIC4.26□□□□□ -1.73
SCN4AP35499 AC068020.1-201ENST00000594215 661 ntBASIC4.26□□□□□ -1.73
SCN4AP35499 AC241377.1-201ENST00000619797 406 ntBASIC4.26□□□□□ -1.73
SCN4AP35499 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC4.26□□□□□ -1.73
SCN4AP35499 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
SCN4AP35499 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
SCN4AP35499 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
SCN4AP35499 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms