Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC4.16□□□□□ -1.74
PTPN4P29074 RPL6P5-201ENST00000445678 828 ntBASIC4.16□□□□□ -1.74
PTPN4P29074 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.16□□□□□ -1.74
PTPN4P29074 AC108729.2-201ENST00000476543 840 ntBASIC4.16□□□□□ -1.74
PTPN4P29074 AC104164.2-201ENST00000496953 495 ntBASIC4.16□□□□□ -1.74
PTPN4P29074 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC4.16□□□□□ -1.74
PTPN4P29074 MTATP6P22-201ENST00000507369 598 ntBASIC4.16□□□□□ -1.74
PTPN4P29074 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC4.16□□□□□ -1.74
PTPN4P29074 AC025768.1-201ENST00000510057 267 ntBASIC4.16□□□□□ -1.74
PTPN4P29074 AC026402.1-201ENST00000513642 170 ntBASIC4.16□□□□□ -1.74
PTPN4P29074 IGKV2-38-201ENST00000517443 247 ntBASIC4.16□□□□□ -1.74
PTPN4P29074 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC4.16□□□□□ -1.74
PTPN4P29074 LINC00911-201ENST00000555272 546 ntTSL 2 BASIC4.16□□□□□ -1.74
PTPN4P29074 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC4.16□□□□□ -1.74
PTPN4P29074 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC4.16□□□□□ -1.74
PTPN4P29074 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
PTPN4P29074 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
PTPN4P29074 AC079880.2-201ENST00000603790 1213 ntBASIC4.16□□□□□ -1.74
PTPN4P29074 AC079587.1-201ENST00000603846 277 ntBASIC4.16□□□□□ -1.74
PTPN4P29074 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC4.16□□□□□ -1.74
PTPN4P29074 AC128687.2-201ENST00000609657 566 ntBASIC4.16□□□□□ -1.74
PTPN4P29074 AC095038.2-201ENST00000621464 1070 ntBASIC4.16□□□□□ -1.74
PTPN4P29074 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.16□□□□□ -1.74
PTPN4P29074 AC140479.6-201ENST00000633535 357 ntBASIC4.16□□□□□ -1.74
PTPN4P29074 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.16□□□□□ -1.74
PTPN4P29074 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.16□□□□□ -1.74
PTPN4P29074 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC4.16□□□□□ -1.74
PTPN4P29074 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
PTPN4P29074 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
PTPN4P29074 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
PTPN4P29074 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.15□□□□□ -1.74
PTPN4P29074 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.15□□□□□ -1.74
PTPN4P29074 MIR383-201ENST00000362257 73 ntBASIC4.15□□□□□ -1.75
PTPN4P29074 RNU6-650P-201ENST00000365658 111 ntBASIC4.15□□□□□ -1.75
PTPN4P29074 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
PTPN4P29074 OR52E6-202ENST00000379946 954 ntBASIC4.15□□□□□ -1.75
PTPN4P29074 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC4.15□□□□□ -1.75
PTPN4P29074 MTCO1P54-201ENST00000430139 712 ntBASIC4.15□□□□□ -1.75
PTPN4P29074 RPL17P35-201ENST00000432217 549 ntBASIC4.15□□□□□ -1.75
PTPN4P29074 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC4.15□□□□□ -1.75
PTPN4P29074 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC4.15□□□□□ -1.75
PTPN4P29074 AC114495.1-201ENST00000441274 436 ntBASIC4.15□□□□□ -1.75
PTPN4P29074 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC4.15□□□□□ -1.75
PTPN4P29074 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC4.15□□□□□ -1.75
PTPN4P29074 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC4.15□□□□□ -1.75
PTPN4P29074 AC007537.2-201ENST00000472093 511 ntBASIC4.15□□□□□ -1.75
PTPN4P29074 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC4.15□□□□□ -1.75
PTPN4P29074 AC041039.1-201ENST00000485656 536 ntBASIC4.15□□□□□ -1.75
PTPN4P29074 RPL31P61-201ENST00000496160 376 ntBASIC4.15□□□□□ -1.75
PTPN4P29074 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC4.15□□□□□ -1.75
PTPN4P29074 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC4.15□□□□□ -1.75
PTPN4P29074 AC108475.1-201ENST00000507880 950 ntBASIC4.15□□□□□ -1.75
PTPN4P29074 AC008628.1-201ENST00000508663 265 ntBASIC4.15□□□□□ -1.75
PTPN4P29074 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC4.15□□□□□ -1.75
PTPN4P29074 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.15□□□□□ -1.75
PTPN4P29074 NARSP2-201ENST00000518524 679 ntBASIC4.15□□□□□ -1.75
PTPN4P29074 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC4.15□□□□□ -1.75
PTPN4P29074 IGLVVI-25-1-201ENST00000521893 249 ntBASIC4.15□□□□□ -1.75
PTPN4P29074 COX6B1P6-201ENST00000522347 255 ntBASIC4.15□□□□□ -1.75
PTPN4P29074 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC4.15□□□□□ -1.75
PTPN4P29074 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC4.15□□□□□ -1.75
PTPN4P29074 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC4.15□□□□□ -1.75
PTPN4P29074 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC4.15□□□□□ -1.75
PTPN4P29074 AP001180.3-201ENST00000582221 145 ntBASIC4.15□□□□□ -1.75
PTPN4P29074 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC4.15□□□□□ -1.75
PTPN4P29074 AL392112.1-201ENST00000605115 829 ntBASIC4.15□□□□□ -1.75
PTPN4P29074 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC4.15□□□□□ -1.75
PTPN4P29074 FP325313.1-201ENST00000638228 703 ntBASIC4.15□□□□□ -1.75
PTPN4P29074 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC4.15□□□□□ -1.75
PTPN4P29074 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
PTPN4P29074 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
PTPN4P29074 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC4.15□□□□□ -1.75
PTPN4P29074 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
PTPN4P29074 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC4.15□□□□□ -1.75
PTPN4P29074 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
PTPN4P29074 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.15□□□□□ -1.75
PTPN4P29074 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC4.14□□□□□ -1.75
PTPN4P29074 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
PTPN4P29074 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
PTPN4P29074 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.14□□□□□ -1.75
PTPN4P29074 ZNF33CP-201ENST00000432492 2030 ntBASIC4.14□□□□□ -1.75
PTPN4P29074 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
PTPN4P29074 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
PTPN4P29074 AL138878.1-201ENST00000405131 347 ntBASIC4.14□□□□□ -1.75
PTPN4P29074 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC4.14□□□□□ -1.75
PTPN4P29074 RPL31P45-201ENST00000419532 356 ntBASIC4.14□□□□□ -1.75
PTPN4P29074 AC093422.3-201ENST00000428506 305 ntBASIC4.14□□□□□ -1.75
PTPN4P29074 AC008065.1-201ENST00000428525 348 ntBASIC4.14□□□□□ -1.75
PTPN4P29074 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC4.14□□□□□ -1.75
PTPN4P29074 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC4.14□□□□□ -1.75
PTPN4P29074 AC087650.1-201ENST00000431445 468 ntBASIC4.14□□□□□ -1.75
PTPN4P29074 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC4.14□□□□□ -1.75
PTPN4P29074 KCTD10P1-201ENST00000434203 625 ntBASIC4.14□□□□□ -1.75
PTPN4P29074 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC4.14□□□□□ -1.75
PTPN4P29074 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC4.14□□□□□ -1.75
PTPN4P29074 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC4.14□□□□□ -1.75
PTPN4P29074 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC4.14□□□□□ -1.75
PTPN4P29074 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC4.14□□□□□ -1.75
PTPN4P29074 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC4.14□□□□□ -1.75
PTPN4P29074 RPS7P7-201ENST00000463499 571 ntBASIC4.14□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 122.1 ms