Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 TDGF1P1-201ENST00000445734 527 ntBASIC4.83□□□□□ -1.64
BDNFP23560 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC4.83□□□□□ -1.64
BDNFP23560 RPL21P104-201ENST00000464143 478 ntBASIC4.83□□□□□ -1.64
BDNFP23560 RPL21P126-201ENST00000470049 478 ntBASIC4.83□□□□□ -1.64
BDNFP23560 AC025674.1-201ENST00000507074 324 ntBASIC4.83□□□□□ -1.64
BDNFP23560 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC4.83□□□□□ -1.64
BDNFP23560 AC090281.1-201ENST00000523019 276 ntBASIC4.83□□□□□ -1.64
BDNFP23560 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
BDNFP23560 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC4.83□□□□□ -1.64
BDNFP23560 CYCSP28-201ENST00000534284 321 ntBASIC4.83□□□□□ -1.64
BDNFP23560 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC4.83□□□□□ -1.64
BDNFP23560 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
BDNFP23560 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC4.83□□□□□ -1.64
BDNFP23560 MIR4277-201ENST00000578298 84 ntBASIC4.83□□□□□ -1.64
BDNFP23560 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC4.83□□□□□ -1.64
BDNFP23560 SNRPGP15-201ENST00000600149 222 ntBASIC4.83□□□□□ -1.64
BDNFP23560 AP005019.3-201ENST00000620418 560 ntBASIC4.83□□□□□ -1.64
BDNFP23560 AC112200.1-201ENST00000625015 234 ntBASIC4.83□□□□□ -1.64
BDNFP23560 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC4.83□□□□□ -1.64
BDNFP23560 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC4.83□□□□□ -1.64
BDNFP23560 AF001550.2-201ENST00000636643 217 ntBASIC4.83□□□□□ -1.64
BDNFP23560 AC139713.2-210ENST00000641741 992 ntBASIC4.83□□□□□ -1.64
BDNFP23560 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.83□□□□□ -1.64
BDNFP23560 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
BDNFP23560 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
BDNFP23560 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC4.83□□□□□ -1.64
BDNFP23560 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.82□□□□□ -1.64
BDNFP23560 AL359893.1-201ENST00000447628 1580 ntBASIC4.82□□□□□ -1.64
BDNFP23560 MAPK10-372ENST00000641954 3413 ntBASIC4.82□□□□□ -1.64
BDNFP23560 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
BDNFP23560 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
BDNFP23560 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
BDNFP23560 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
BDNFP23560 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
BDNFP23560 AC126323.6-202ENST00000568092 3511 ntBASIC4.82□□□□□ -1.64
BDNFP23560 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.82□□□□□ -1.64
BDNFP23560 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC4.82□□□□□ -1.64
BDNFP23560 RNU6-236P-201ENST00000363886 106 ntBASIC4.82□□□□□ -1.64
BDNFP23560 RNU6-374P-201ENST00000364146 108 ntBASIC4.82□□□□□ -1.64
BDNFP23560 AL023807.1-201ENST00000407932 359 ntBASIC4.82□□□□□ -1.64
BDNFP23560 RNU2-37P-201ENST00000410695 177 ntBASIC4.82□□□□□ -1.64
BDNFP23560 AL133384.1-201ENST00000412744 351 ntBASIC4.82□□□□□ -1.64
BDNFP23560 PTP4A1P5-201ENST00000420305 455 ntBASIC4.82□□□□□ -1.64
BDNFP23560 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC4.82□□□□□ -1.64
BDNFP23560 FO393414.1-201ENST00000428697 1184 ntBASIC4.82□□□□□ -1.64
BDNFP23560 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC4.82□□□□□ -1.64
BDNFP23560 RPS7P2-201ENST00000435134 607 ntBASIC4.82□□□□□ -1.64
BDNFP23560 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC4.82□□□□□ -1.64
BDNFP23560 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC4.82□□□□□ -1.64
BDNFP23560 TRBV26-201ENST00000456572 344 ntBASIC4.82□□□□□ -1.64
BDNFP23560 RPL21P18-201ENST00000469899 480 ntBASIC4.82□□□□□ -1.64
BDNFP23560 AC092451.1-201ENST00000480211 153 ntBASIC4.82□□□□□ -1.64
BDNFP23560 AC092902.1-201ENST00000486999 259 ntBASIC4.82□□□□□ -1.64
BDNFP23560 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC4.82□□□□□ -1.64
BDNFP23560 HPRT1P1-201ENST00000509498 657 ntBASIC4.82□□□□□ -1.64
BDNFP23560 AC034205.1-201ENST00000520621 638 ntBASIC4.82□□□□□ -1.64
BDNFP23560 OR5D17P-201ENST00000531492 978 ntBASIC4.82□□□□□ -1.64
BDNFP23560 AC009643.1-201ENST00000532030 391 ntBASIC4.82□□□□□ -1.64
BDNFP23560 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC4.82□□□□□ -1.64
BDNFP23560 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC4.82□□□□□ -1.64
BDNFP23560 ETFRF1-202ENST00000553788 708 ntTSL 3 BASIC4.82□□□□□ -1.64
BDNFP23560 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC4.82□□□□□ -1.64
BDNFP23560 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC4.82□□□□□ -1.64
BDNFP23560 AC015912.2-201ENST00000571053 181 ntBASIC4.82□□□□□ -1.64
BDNFP23560 AC126365.2-201ENST00000580630 379 ntBASIC4.82□□□□□ -1.64
BDNFP23560 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC4.82□□□□□ -1.64
BDNFP23560 AL020997.3-201ENST00000602843 359 ntBASIC4.82□□□□□ -1.64
BDNFP23560 RPAP2P1-201ENST00000603626 1168 ntBASIC4.82□□□□□ -1.64
BDNFP23560 AC115286.1-201ENST00000604298 434 ntBASIC4.82□□□□□ -1.64
BDNFP23560 HMGN2P28-201ENST00000606102 262 ntBASIC4.82□□□□□ -1.64
BDNFP23560 AL121873.1-201ENST00000616013 524 ntBASIC4.82□□□□□ -1.64
BDNFP23560 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC4.82□□□□□ -1.64
BDNFP23560 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
BDNFP23560 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC4.82□□□□□ -1.64
BDNFP23560 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC4.82□□□□□ -1.64
BDNFP23560 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
BDNFP23560 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.82□□□□□ -1.64
BDNFP23560 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.81□□□□□ -1.64
BDNFP23560 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC4.81□□□□□ -1.64
BDNFP23560 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
BDNFP23560 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
BDNFP23560 MTND4P26-201ENST00000415971 1359 ntBASIC4.81□□□□□ -1.64
BDNFP23560 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
BDNFP23560 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC4.81□□□□□ -1.64
BDNFP23560 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC4.81□□□□□ -1.64
BDNFP23560 RNU6-1181P-201ENST00000384191 106 ntBASIC4.81□□□□□ -1.64
BDNFP23560 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
BDNFP23560 AL359643.1-201ENST00000404109 423 ntBASIC4.81□□□□□ -1.64
BDNFP23560 ELOCP19-201ENST00000411919 318 ntBASIC4.81□□□□□ -1.64
BDNFP23560 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC4.81□□□□□ -1.64
BDNFP23560 SFR1P2-201ENST00000421841 730 ntBASIC4.81□□□□□ -1.64
BDNFP23560 RPS6P14-201ENST00000425165 719 ntBASIC4.81□□□□□ -1.64
BDNFP23560 RPL18P10-201ENST00000425606 538 ntBASIC4.81□□□□□ -1.64
BDNFP23560 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
BDNFP23560 CCNB1IP1P2-201ENST00000432876 818 ntBASIC4.81□□□□□ -1.64
BDNFP23560 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC4.81□□□□□ -1.64
BDNFP23560 ELOCP13-201ENST00000443934 329 ntBASIC4.81□□□□□ -1.64
BDNFP23560 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
BDNFP23560 NPM1P49-201ENST00000448027 714 ntBASIC4.81□□□□□ -1.64
BDNFP23560 NDUFA5P9-201ENST00000472609 340 ntBASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms