Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 SNORD70.1-201ENST00000391007 85 ntBASIC7.11□□□□□ -1.27
COL9A1P20849 AL133268.2-201ENST00000416595 430 ntTSL 3 BASIC7.11□□□□□ -1.27
COL9A1P20849 LINC00222-203ENST00000416890 602 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
COL9A1P20849 LIX1L-AS1-203ENST00000421764 287 ntTSL 2 BASIC7.11□□□□□ -1.27
COL9A1P20849 AL355433.1-201ENST00000422804 300 ntBASIC7.11□□□□□ -1.27
COL9A1P20849 AC096920.1-201ENST00000423991 241 ntBASIC7.11□□□□□ -1.27
COL9A1P20849 AL645568.3-201ENST00000433683 316 ntBASIC7.11□□□□□ -1.27
COL9A1P20849 RPL21P112-201ENST00000434403 463 ntBASIC7.11□□□□□ -1.27
COL9A1P20849 ATP6V1G1P4-201ENST00000438388 335 ntBASIC7.11□□□□□ -1.27
COL9A1P20849 ATP5LP2-201ENST00000440646 311 ntBASIC7.11□□□□□ -1.27
COL9A1P20849 SNRPBP1-201ENST00000443634 282 ntBASIC7.11□□□□□ -1.27
COL9A1P20849 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC7.11□□□□□ -1.27
COL9A1P20849 AC026785.3-201ENST00000511182 285 ntTSL 2 BASIC7.11□□□□□ -1.27
COL9A1P20849 FAM60DP-201ENST00000524174 632 ntBASIC7.11□□□□□ -1.27
COL9A1P20849 AP005597.2-201ENST00000526238 341 ntBASIC7.11□□□□□ -1.27
COL9A1P20849 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC7.11□□□□□ -1.27
COL9A1P20849 AL390123.1-201ENST00000603216 237 ntBASIC7.11□□□□□ -1.27
COL9A1P20849 AL355877.2-201ENST00000603670 358 ntBASIC7.11□□□□□ -1.27
COL9A1P20849 HNRNPA3P9-201ENST00000604913 979 ntBASIC7.11□□□□□ -1.27
COL9A1P20849 AP001282.2-201ENST00000616149 309 ntBASIC7.11□□□□□ -1.27
COL9A1P20849 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC7.11□□□□□ -1.27
COL9A1P20849 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
COL9A1P20849 DTNA-204ENST00000348997 4518 ntAPPRIS P3 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL9A1P20849 HLTF-203ENST00000465259 5306 ntAPPRIS ALT1 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL9A1P20849 ZNF667-208ENST00000629654 3265 ntTSL 5 BASIC7.11□□□□□ -1.27
COL9A1P20849 CDY18P-201ENST00000438294 1609 ntBASIC7.11□□□□□ -1.27
COL9A1P20849 ZNF844-202ENST00000441304 2036 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
COL9A1P20849 ZNF793-201ENST00000445217 6712 ntAPPRIS P1 TSL 5 BASIC7.11□□□□□ -1.27
COL9A1P20849 TMEM135-202ENST00000340353 3938 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
COL9A1P20849 FAM111B-201ENST00000343597 3488 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL9A1P20849 Z95327.2-201ENST00000414579 1873 ntBASIC7.11□□□□□ -1.27
COL9A1P20849 DIO2-210ENST00000557010 6367 ntAPPRIS P1 TSL 2 BASIC7.11□□□□□ -1.27
COL9A1P20849 CCP110-202ENST00000396208 5151 ntAPPRIS P3 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL9A1P20849 MFSD8-218ENST00000641186 4448 ntBASIC7.11□□□□□ -1.27
COL9A1P20849 CTNNA2-218ENST00000541047 2870 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
COL9A1P20849 FTO-222ENST00000637969 2889 ntTSL 5 BASIC7.1□□□□□ -1.27
COL9A1P20849 LRRC36-205ENST00000563189 2104 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
COL9A1P20849 DCX-205ENST00000488120 2476 ntAPPRIS ALT1 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL9A1P20849 GABRR1-203ENST00000454853 2820 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL9A1P20849 ZBTB18-201ENST00000358704 3851 ntAPPRIS P2 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL9A1P20849 ALMS1-206ENST00000613296 12925 ntAPPRIS P2 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL9A1P20849 KCNAB1-212ENST00000490337 3122 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
COL9A1P20849 GON4L-201ENST00000271883 7138 ntAPPRIS P3 TSL 5 BASIC7.1□□□□□ -1.27
COL9A1P20849 CCDC73-203ENST00000531481 4381 ntAPPRIS ALT2 TSL 2 BASIC7.1□□□□□ -1.27
COL9A1P20849 ZC3H11B-201ENST00000367211 2994 ntAPPRIS P5 TSL 5 BASIC7.1□□□□□ -1.27
COL9A1P20849 NCAPH-205ENST00000455200 2952 ntAPPRIS ALT2 TSL 5 BASIC7.1□□□□□ -1.27
COL9A1P20849 HABP2-203ENST00000542051 2972 ntAPPRIS ALT2 TSL 2 BASIC7.1□□□□□ -1.27
COL9A1P20849 PBRM1-203ENST00000356770 7523 ntAPPRIS ALT1 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL9A1P20849 HP1BP3-201ENST00000312239 3938 ntAPPRIS P1 TSL 2 BASIC7.1□□□□□ -1.27
COL9A1P20849 NSA2-205ENST00000610426 4594 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL9A1P20849 HUS1-201ENST00000258774 2935 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL9A1P20849 AC010886.1-201ENST00000437380 2869 ntBASIC7.1□□□□□ -1.27
COL9A1P20849 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC7.1□□□□□ -1.27
COL9A1P20849 RNU6-960P-201ENST00000364056 120 ntBASIC7.1□□□□□ -1.27
COL9A1P20849 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL9A1P20849 RNY1P5-201ENST00000383890 115 ntBASIC7.1□□□□□ -1.27
COL9A1P20849 RNU6-611P-201ENST00000384276 104 ntBASIC7.1□□□□□ -1.27
COL9A1P20849 RNU6-1203P-201ENST00000410703 110 ntBASIC7.1□□□□□ -1.27
COL9A1P20849 AL035422.1-201ENST00000414193 397 ntBASIC7.1□□□□□ -1.27
COL9A1P20849 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC7.1□□□□□ -1.27
COL9A1P20849 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC7.1□□□□□ -1.27
COL9A1P20849 AL354707.3-201ENST00000427308 331 ntBASIC7.1□□□□□ -1.27
COL9A1P20849 AL353597.2-202ENST00000434901 373 ntBASIC7.1□□□□□ -1.27
COL9A1P20849 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC7.1□□□□□ -1.27
COL9A1P20849 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC7.1□□□□□ -1.27
COL9A1P20849 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
COL9A1P20849 CYCSP34-201ENST00000458172 304 ntBASIC7.1□□□□□ -1.27
COL9A1P20849 OARD1-209ENST00000471367 401 ntTSL 2 BASIC7.1□□□□□ -1.27
COL9A1P20849 AC026254.2-201ENST00000475295 371 ntBASIC7.1□□□□□ -1.27
COL9A1P20849 ATP5LP5-201ENST00000483050 299 ntBASIC7.1□□□□□ -1.27
COL9A1P20849 RN7SL797P-201ENST00000486314 297 ntBASIC7.1□□□□□ -1.27
COL9A1P20849 LSM3P4-201ENST00000502948 309 ntBASIC7.1□□□□□ -1.27
COL9A1P20849 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC7.1□□□□□ -1.27
COL9A1P20849 AC022296.2-201ENST00000512424 202 ntBASIC7.1□□□□□ -1.27
COL9A1P20849 RNU6-685P-201ENST00000517088 95 ntBASIC7.1□□□□□ -1.27
COL9A1P20849 CYCSP27-201ENST00000527643 293 ntBASIC7.1□□□□□ -1.27
COL9A1P20849 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC7.1□□□□□ -1.27
COL9A1P20849 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC7.1□□□□□ -1.27
COL9A1P20849 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC7.1□□□□□ -1.27
COL9A1P20849 CEBPG-202ENST00000585933 3845 ntAPPRIS P1 TSL 2 BASIC7.1□□□□□ -1.27
COL9A1P20849 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC7.1□□□□□ -1.27
COL9A1P20849 AL355333.1-201ENST00000605632 279 ntBASIC7.1□□□□□ -1.27
COL9A1P20849 AC024884.1-201ENST00000620583 399 ntBASIC7.1□□□□□ -1.27
COL9A1P20849 AC073488.3-201ENST00000631611 778 ntBASIC7.1□□□□□ -1.27
COL9A1P20849 AC073869.10-201ENST00000642016 354 ntBASIC7.1□□□□□ -1.27
COL9A1P20849 AP002800.1-201ENST00000624982 2225 ntBASIC7.1□□□□□ -1.27
COL9A1P20849 NECAP1-221ENST00000639955 3479 ntAPPRIS P2 TSL 5 BASIC7.1□□□□□ -1.27
COL9A1P20849 NBEA-202ENST00000379922 3794 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
COL9A1P20849 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC7.1□□□□□ -1.27
COL9A1P20849 ADGRF2-204ENST00000507065 3043 ntTSL 5 BASIC7.1□□□□□ -1.27
COL9A1P20849 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL9A1P20849 TEK-201ENST00000380036 4760 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL9A1P20849 CDH12-202ENST00000504376 4160 ntAPPRIS P1 TSL 5 BASIC7.1□□□□□ -1.27
COL9A1P20849 FAM186A-201ENST00000327337 7127 ntAPPRIS P2 TSL 5 BASIC7.1□□□□□ -1.27
COL9A1P20849 AC241584.2-201ENST00000637142 2090 ntBASIC7.1□□□□□ -1.27
COL9A1P20849 DOCK5-201ENST00000276440 10075 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL9A1P20849 CD300E-201ENST00000392619 3501 ntAPPRIS P2 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL9A1P20849 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC7.1□□□□□ -1.27
COL9A1P20849 HDAC2-AS2-208ENST00000519104 2016 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
COL9A1P20849 KANTR-203ENST00000604062 4251 ntAPPRIS P1 TSL 5 BASIC7.1□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms