Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 ENSAP3-201ENST00000312710 333 ntBASIC5.72□□□□□ -1.49
COL6A1P12109 Y_RNA.18-201ENST00000362461 102 ntBASIC5.72□□□□□ -1.49
COL6A1P12109 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
COL6A1P12109 OR1L1-202ENST00000373686 1083 ntBASIC5.72□□□□□ -1.49
COL6A1P12109 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL6A1P12109 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
COL6A1P12109 RNU11-201ENST00000387069 134 ntBASIC5.72□□□□□ -1.49
COL6A1P12109 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL6A1P12109 AL049693.1-201ENST00000402760 611 ntBASIC5.72□□□□□ -1.49
COL6A1P12109 RPL31P52-201ENST00000407532 367 ntBASIC5.72□□□□□ -1.49
COL6A1P12109 RNA5SP80-201ENST00000410475 111 ntBASIC5.72□□□□□ -1.49
COL6A1P12109 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC5.72□□□□□ -1.49
COL6A1P12109 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC5.72□□□□□ -1.49
COL6A1P12109 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC5.72□□□□□ -1.49
COL6A1P12109 MRPS36P1-201ENST00000421291 307 ntBASIC5.72□□□□□ -1.49
COL6A1P12109 OFD1P2Y-201ENST00000421895 1149 ntBASIC5.72□□□□□ -1.49
COL6A1P12109 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC5.72□□□□□ -1.49
COL6A1P12109 AC073465.2-201ENST00000440938 498 ntBASIC5.72□□□□□ -1.49
COL6A1P12109 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC5.72□□□□□ -1.49
COL6A1P12109 ST13P20-201ENST00000447996 1065 ntBASIC5.72□□□□□ -1.49
COL6A1P12109 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC5.72□□□□□ -1.49
COL6A1P12109 NUTF2P7-201ENST00000453086 375 ntBASIC5.72□□□□□ -1.49
COL6A1P12109 MTCO3P11-201ENST00000455103 774 ntBASIC5.72□□□□□ -1.49
COL6A1P12109 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC5.72□□□□□ -1.49
COL6A1P12109 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC5.72□□□□□ -1.49
COL6A1P12109 AC010326.1-201ENST00000462726 602 ntBASIC5.72□□□□□ -1.49
COL6A1P12109 AC010683.1-201ENST00000473673 378 ntBASIC5.72□□□□□ -1.49
COL6A1P12109 AC072039.1-201ENST00000477611 581 ntBASIC5.72□□□□□ -1.49
COL6A1P12109 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC5.72□□□□□ -1.49
COL6A1P12109 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC5.72□□□□□ -1.49
COL6A1P12109 HMGB3P13-201ENST00000511263 607 ntBASIC5.72□□□□□ -1.49
COL6A1P12109 FABP5P5-201ENST00000515537 406 ntBASIC5.72□□□□□ -1.49
COL6A1P12109 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC5.72□□□□□ -1.49
COL6A1P12109 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC5.72□□□□□ -1.49
COL6A1P12109 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC5.72□□□□□ -1.49
COL6A1P12109 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC5.72□□□□□ -1.49
COL6A1P12109 AL020997.2-201ENST00000602607 184 ntBASIC5.72□□□□□ -1.49
COL6A1P12109 AL360012.1-201ENST00000602813 131 ntBASIC5.72□□□□□ -1.49
COL6A1P12109 AC083899.3-201ENST00000603413 594 ntBASIC5.72□□□□□ -1.49
COL6A1P12109 AC103881.1-201ENST00000603476 538 ntBASIC5.72□□□□□ -1.49
COL6A1P12109 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC5.72□□□□□ -1.49
COL6A1P12109 AL162431.4-201ENST00000604674 411 ntBASIC5.72□□□□□ -1.49
COL6A1P12109 AC090186.1-201ENST00000605991 572 ntBASIC5.72□□□□□ -1.49
COL6A1P12109 AC017083.3-201ENST00000609955 700 ntBASIC5.72□□□□□ -1.49
COL6A1P12109 AC099654.12-201ENST00000639868 649 ntBASIC5.72□□□□□ -1.49
COL6A1P12109 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC5.72□□□□□ -1.49
COL6A1P12109 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
COL6A1P12109 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC5.72□□□□□ -1.49
COL6A1P12109 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
COL6A1P12109 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL6A1P12109 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC5.72□□□□□ -1.49
COL6A1P12109 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
COL6A1P12109 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC5.72□□□□□ -1.49
COL6A1P12109 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL6A1P12109 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL6A1P12109 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
COL6A1P12109 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
COL6A1P12109 KYNUP3-201ENST00000574386 1341 ntBASIC5.72□□□□□ -1.49
COL6A1P12109 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC5.72□□□□□ -1.49
COL6A1P12109 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
COL6A1P12109 AC091046.3-201ENST00000631455 1574 ntBASIC5.72□□□□□ -1.49
COL6A1P12109 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.71□□□□□ -1.49
COL6A1P12109 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
COL6A1P12109 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC5.71□□□□□ -1.49
COL6A1P12109 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC5.71□□□□□ -1.49
COL6A1P12109 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
COL6A1P12109 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC5.71□□□□□ -1.5
COL6A1P12109 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
COL6A1P12109 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL6A1P12109 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL6A1P12109 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
COL6A1P12109 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL6A1P12109 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL6A1P12109 OR9G4-201ENST00000302957 984 ntBASIC5.71□□□□□ -1.5
COL6A1P12109 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
COL6A1P12109 Y_RNA.88-201ENST00000363029 99 ntBASIC5.71□□□□□ -1.5
COL6A1P12109 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
COL6A1P12109 IL6-206ENST00000407492 926 ntTSL 3 BASIC5.71□□□□□ -1.5
COL6A1P12109 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC5.71□□□□□ -1.5
COL6A1P12109 RPL17P36-201ENST00000420302 549 ntBASIC5.71□□□□□ -1.5
COL6A1P12109 CHIAP3-201ENST00000423668 1133 ntBASIC5.71□□□□□ -1.5
COL6A1P12109 AL590399.2-201ENST00000427536 309 ntBASIC5.71□□□□□ -1.5
COL6A1P12109 AC091862.1-201ENST00000438016 1100 ntBASIC5.71□□□□□ -1.5
COL6A1P12109 AC023271.1-201ENST00000445936 1090 ntBASIC5.71□□□□□ -1.5
COL6A1P12109 HMGB1P16-201ENST00000447155 540 ntBASIC5.71□□□□□ -1.5
COL6A1P12109 DDX39BP2-208ENST00000453923 258 ntBASIC5.71□□□□□ -1.5
COL6A1P12109 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC5.71□□□□□ -1.5
COL6A1P12109 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC5.71□□□□□ -1.5
COL6A1P12109 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC5.71□□□□□ -1.5
COL6A1P12109 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
COL6A1P12109 SCARNA20.4-201ENST00000516969 131 ntBASIC5.71□□□□□ -1.5
COL6A1P12109 RN7SKP92-201ENST00000517266 244 ntBASIC5.71□□□□□ -1.5
COL6A1P12109 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC5.71□□□□□ -1.5
COL6A1P12109 AC022360.1-201ENST00000521058 340 ntBASIC5.71□□□□□ -1.5
COL6A1P12109 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC5.71□□□□□ -1.5
COL6A1P12109 AP001207.1-201ENST00000524051 481 ntBASIC5.71□□□□□ -1.5
COL6A1P12109 AC005832.3-201ENST00000537929 631 ntBASIC5.71□□□□□ -1.5
COL6A1P12109 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC5.71□□□□□ -1.5
COL6A1P12109 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC5.71□□□□□ -1.5
COL6A1P12109 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 118.6 ms