Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 RNU6-254P-201ENST00000363377 107 ntBASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 Y_RNA.144-201ENST00000363521 113 ntBASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 RNU6-374P-201ENST00000364146 108 ntBASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 RNA5SP131-201ENST00000365452 119 ntBASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 OR1L6-202ENST00000373684 1044 ntBASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 RNU6-1263P-201ENST00000384601 106 ntBASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 SNORA48.4-201ENST00000391089 134 ntBASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 RNU6-248P-201ENST00000410720 107 ntBASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 EEF1A1P29-201ENST00000416082 1096 ntBASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 AL353729.1-201ENST00000425044 720 ntBASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 AL022238.1-201ENST00000442557 355 ntBASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 AL450996.1-201ENST00000445574 1202 ntBASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 AC073909.1-201ENST00000447112 999 ntBASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 MTCO3P11-201ENST00000455103 774 ntBASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 AC094085.1-201ENST00000468914 584 ntBASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 SRP72-202ENST00000504757 745 ntTSL 2 BASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 UGT2A3P7-201ENST00000510485 734 ntBASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 CYCSP22-201ENST00000517555 339 ntBASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 AC093027.1-201ENST00000546698 429 ntBASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 AC026470.2-201ENST00000561492 181 ntBASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 MIR3913-1-201ENST00000577744 102 ntBASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 AC069304.2-201ENST00000605154 435 ntBASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 AL590282.1-201ENST00000610379 1136 ntBASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 CLEC1A-204ENST00000457018 1686 ntAPPRIS ALT2 TSL 2 BASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 MTCO1P23-201ENST00000415223 1526 ntBASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC6.27□□□□□ -1.4
CCDC39Q9UFE4 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC6.27□□□□□ -1.4
CCDC39Q9UFE4 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC6.27□□□□□ -1.4
CCDC39Q9UFE4 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 Y_RNA.216-201ENST00000364205 93 ntBASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 Y_RNA.302-201ENST00000364997 102 ntBASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 Y_RNA.419-201ENST00000384041 102 ntBASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 AC007066.1-201ENST00000392902 381 ntBASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 EI24P3-201ENST00000399046 1062 ntBASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 RNU2-22P-201ENST00000411266 212 ntBASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 AC004987.3-201ENST00000413879 771 ntBASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 AC019050.1-201ENST00000418508 492 ntBASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 MTCO1P20-201ENST00000425366 358 ntBASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 TIMM9P3-201ENST00000428659 274 ntBASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 RPL7P56-201ENST00000429441 717 ntBASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 AC090804.1-201ENST00000448870 490 ntBASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 AC107072.1-201ENST00000449007 110 ntTSL 3 BASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 AC079776.3-201ENST00000450665 370 ntBASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 RPL30P9-201ENST00000465586 330 ntBASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 RPSAP39-201ENST00000467439 883 ntBASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 AC091912.1-201ENST00000511351 248 ntBASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 SNORA43.3-201ENST00000517240 103 ntBASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 AP006245.2-201ENST00000522004 300 ntBASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 AC044913.1-201ENST00000557200 430 ntBASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 HMGB1P33-201ENST00000563485 527 ntBASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 AC122134.1-201ENST00000565664 1104 ntBASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 CDC42EP3P1-201ENST00000601004 764 ntBASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 AC073091.2-201ENST00000603205 907 ntBASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 AP005431.1-201ENST00000618479 319 ntBASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 MIR193BHG-214ENST00000641765 509 ntBASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC6.27□□□□□ -1.41
CCDC39Q9UFE4 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC6.27□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 120.5 ms