Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC4.11□□□□□ -1.75
CCDC112Q8NEF3 AC006326.1-201ENST00000445465 787 ntBASIC4.11□□□□□ -1.75
CCDC112Q8NEF3 AL354710.1-201ENST00000453641 246 ntBASIC4.11□□□□□ -1.75
CCDC112Q8NEF3 AC099563.1-201ENST00000456086 418 ntBASIC4.11□□□□□ -1.75
CCDC112Q8NEF3 RPL6P9-201ENST00000466502 859 ntBASIC4.11□□□□□ -1.75
CCDC112Q8NEF3 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.11□□□□□ -1.75
CCDC112Q8NEF3 ACTG1P13-201ENST00000486987 1043 ntBASIC4.11□□□□□ -1.75
CCDC112Q8NEF3 AC109635.6-201ENST00000525487 1113 ntBASIC4.11□□□□□ -1.75
CCDC112Q8NEF3 AC011602.1-201ENST00000546484 331 ntBASIC4.11□□□□□ -1.75
CCDC112Q8NEF3 TGIF1P1-201ENST00000558095 802 ntBASIC4.11□□□□□ -1.75
CCDC112Q8NEF3 AC106785.3-201ENST00000564064 847 ntBASIC4.11□□□□□ -1.75
CCDC112Q8NEF3 MIR3186-201ENST00000577404 85 ntBASIC4.11□□□□□ -1.75
CCDC112Q8NEF3 AC011492.1-201ENST00000600023 315 ntBASIC4.11□□□□□ -1.75
CCDC112Q8NEF3 AC099676.1-201ENST00000608886 657 ntBASIC4.11□□□□□ -1.75
CCDC112Q8NEF3 AC016957.2-201ENST00000616998 848 ntBASIC4.11□□□□□ -1.75
CCDC112Q8NEF3 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC4.11□□□□□ -1.75
CCDC112Q8NEF3 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
CCDC112Q8NEF3 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC4.1□□□□□ -1.75
CCDC112Q8NEF3 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC112Q8NEF3 AC058791.1-201ENST00000608412 3198 ntBASIC4.1□□□□□ -1.75
CCDC112Q8NEF3 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC112Q8NEF3 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC112Q8NEF3 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
CCDC112Q8NEF3 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC4.1□□□□□ -1.75
CCDC112Q8NEF3 SNORA62.2-201ENST00000364672 152 ntBASIC4.1□□□□□ -1.75
CCDC112Q8NEF3 ENSAP1-201ENST00000392855 326 ntBASIC4.1□□□□□ -1.75
CCDC112Q8NEF3 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC112Q8NEF3 RPS27AP11-201ENST00000402798 447 ntBASIC4.1□□□□□ -1.75
CCDC112Q8NEF3 AL158071.1-201ENST00000430315 461 ntBASIC4.1□□□□□ -1.75
CCDC112Q8NEF3 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC4.1□□□□□ -1.75
CCDC112Q8NEF3 AL645939.1-201ENST00000453429 797 ntBASIC4.1□□□□□ -1.75
CCDC112Q8NEF3 RPL5P32-201ENST00000454085 879 ntBASIC4.1□□□□□ -1.75
CCDC112Q8NEF3 CYCSP20-201ENST00000473154 315 ntBASIC4.1□□□□□ -1.75
CCDC112Q8NEF3 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC112Q8NEF3 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC4.1□□□□□ -1.75
CCDC112Q8NEF3 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC4.1□□□□□ -1.75
CCDC112Q8NEF3 RFESD-208ENST00000513950 464 ntTSL 5 BASIC4.1□□□□□ -1.75
CCDC112Q8NEF3 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC4.1□□□□□ -1.75
CCDC112Q8NEF3 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC4.1□□□□□ -1.75
CCDC112Q8NEF3 AC006960.3-201ENST00000561845 705 ntBASIC4.1□□□□□ -1.75
CCDC112Q8NEF3 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC4.1□□□□□ -1.75
CCDC112Q8NEF3 AC022916.3-201ENST00000592961 742 ntBASIC4.1□□□□□ -1.75
CCDC112Q8NEF3 AC090953.1-201ENST00000604305 1092 ntBASIC4.1□□□□□ -1.75
CCDC112Q8NEF3 AL354760.1-201ENST00000608357 643 ntBASIC4.1□□□□□ -1.75
CCDC112Q8NEF3 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC112Q8NEF3 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
CCDC112Q8NEF3 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC4.1□□□□□ -1.75
CCDC112Q8NEF3 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
CCDC112Q8NEF3 AC093908.1-201ENST00000623125 8092 ntBASIC4.09□□□□□ -1.75
CCDC112Q8NEF3 AC010329.2-201ENST00000595195 2737 ntBASIC4.09□□□□□ -1.75
CCDC112Q8NEF3 PHKBP1-201ENST00000450951 1951 ntBASIC4.09□□□□□ -1.75
CCDC112Q8NEF3 AC092079.1-201ENST00000558620 1985 ntBASIC4.09□□□□□ -1.75
CCDC112Q8NEF3 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC4.09□□□□□ -1.75
CCDC112Q8NEF3 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.75
CCDC112Q8NEF3 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
CCDC112Q8NEF3 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC4.09□□□□□ -1.75
CCDC112Q8NEF3 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
CCDC112Q8NEF3 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
CCDC112Q8NEF3 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
CCDC112Q8NEF3 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC4.09□□□□□ -1.75
CCDC112Q8NEF3 MIR554-201ENST00000384874 96 ntBASIC4.09□□□□□ -1.75
CCDC112Q8NEF3 MIR134-201ENST00000385258 73 ntBASIC4.09□□□□□ -1.75
CCDC112Q8NEF3 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
CCDC112Q8NEF3 RN7SKP202-201ENST00000410439 330 ntBASIC4.09□□□□□ -1.75
CCDC112Q8NEF3 RAB9AP4-201ENST00000415230 609 ntBASIC4.09□□□□□ -1.75
CCDC112Q8NEF3 AL138785.1-201ENST00000425821 331 ntBASIC4.09□□□□□ -1.75
CCDC112Q8NEF3 SNORA71B-202ENST00000439232 272 ntBASIC4.09□□□□□ -1.75
CCDC112Q8NEF3 HNRNPDLP3-201ENST00000456745 380 ntBASIC4.09□□□□□ -1.75
CCDC112Q8NEF3 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC4.09□□□□□ -1.75
CCDC112Q8NEF3 RPS4XP22-201ENST00000480755 780 ntBASIC4.09□□□□□ -1.75
CCDC112Q8NEF3 IL7R-208ENST00000511982 612 ntTSL 2 BASIC4.09□□□□□ -1.75
CCDC112Q8NEF3 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC4.09□□□□□ -1.75
CCDC112Q8NEF3 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC4.09□□□□□ -1.75
CCDC112Q8NEF3 RNA5SP164-201ENST00000516533 110 ntBASIC4.09□□□□□ -1.75
CCDC112Q8NEF3 NDUFA5P2-201ENST00000519723 344 ntBASIC4.09□□□□□ -1.75
CCDC112Q8NEF3 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC4.09□□□□□ -1.75
CCDC112Q8NEF3 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC4.09□□□□□ -1.75
CCDC112Q8NEF3 AL163642.2-201ENST00000604722 1019 ntBASIC4.09□□□□□ -1.75
CCDC112Q8NEF3 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC4.09□□□□□ -1.75
CCDC112Q8NEF3 CDRT1-208ENST00000630868 794 ntBASIC4.09□□□□□ -1.75
CCDC112Q8NEF3 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
CCDC112Q8NEF3 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC4.09□□□□□ -1.75
CCDC112Q8NEF3 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC4.08□□□□□ -1.76
CCDC112Q8NEF3 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
CCDC112Q8NEF3 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.08□□□□□ -1.76
CCDC112Q8NEF3 AL359837.1-201ENST00000381357 287 ntBASIC4.08□□□□□ -1.76
CCDC112Q8NEF3 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
CCDC112Q8NEF3 RNA5SP105-201ENST00000391123 113 ntBASIC4.08□□□□□ -1.76
CCDC112Q8NEF3 HYKK-202ENST00000408962 847 ntTSL 5 BASIC4.08□□□□□ -1.76
CCDC112Q8NEF3 RNU6-55P-201ENST00000411092 107 ntBASIC4.08□□□□□ -1.76
CCDC112Q8NEF3 RNU6-954P-201ENST00000411355 107 ntBASIC4.08□□□□□ -1.76
CCDC112Q8NEF3 RPL36AP36-201ENST00000418616 301 ntBASIC4.08□□□□□ -1.76
CCDC112Q8NEF3 Z97055.1-201ENST00000419730 712 ntBASIC4.08□□□□□ -1.76
CCDC112Q8NEF3 YY1P1-201ENST00000427625 668 ntBASIC4.08□□□□□ -1.76
CCDC112Q8NEF3 AL117339.2-201ENST00000430475 180 ntBASIC4.08□□□□□ -1.76
CCDC112Q8NEF3 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
CCDC112Q8NEF3 Z95327.1-201ENST00000446082 482 ntBASIC4.08□□□□□ -1.76
CCDC112Q8NEF3 AL162151.2-201ENST00000448875 158 ntBASIC4.08□□□□□ -1.76
CCDC112Q8NEF3 ANP32BP2-201ENST00000454525 545 ntBASIC4.08□□□□□ -1.76
CCDC112Q8NEF3 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 79.7 ms