Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC2.47□□□□□ -2.01
PRKDCP78527 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC2.47□□□□□ -2.01
PRKDCP78527 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
PRKDCP78527 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
PRKDCP78527 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
PRKDCP78527 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC2.47□□□□□ -2.01
PRKDCP78527 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC2.47□□□□□ -2.01
PRKDCP78527 RSL24D1P4-201ENST00000400938 484 ntBASIC2.47□□□□□ -2.01
PRKDCP78527 AL513174.1-201ENST00000423182 629 ntBASIC2.47□□□□□ -2.01
PRKDCP78527 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC2.47□□□□□ -2.01
PRKDCP78527 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC2.47□□□□□ -2.01
PRKDCP78527 RN7SKP46-201ENST00000515942 234 ntBASIC2.47□□□□□ -2.01
PRKDCP78527 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
PRKDCP78527 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC2.47□□□□□ -2.01
PRKDCP78527 MIR2682-201ENST00000580305 110 ntBASIC2.47□□□□□ -2.01
PRKDCP78527 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC2.47□□□□□ -2.01
PRKDCP78527 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC2.47□□□□□ -2.01
PRKDCP78527 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
PRKDCP78527 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
PRKDCP78527 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC2.47□□□□□ -2.01
PRKDCP78527 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC2.46□□□□□ -2.01
PRKDCP78527 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC2.46□□□□□ -2.01
PRKDCP78527 RN7SKP111-201ENST00000410349 271 ntBASIC2.46□□□□□ -2.02
PRKDCP78527 EEF1A1P41-201ENST00000414667 207 ntBASIC2.46□□□□□ -2.02
PRKDCP78527 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
PRKDCP78527 GEMIN8P3-201ENST00000445417 720 ntBASIC2.46□□□□□ -2.02
PRKDCP78527 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC2.46□□□□□ -2.02
PRKDCP78527 AC008413.1-201ENST00000511864 177 ntBASIC2.46□□□□□ -2.02
PRKDCP78527 AC021146.3-201ENST00000511911 260 ntBASIC2.46□□□□□ -2.02
PRKDCP78527 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
PRKDCP78527 AC022080.3-201ENST00000544433 482 ntBASIC2.46□□□□□ -2.02
PRKDCP78527 MIR4435-1-201ENST00000582552 80 ntBASIC2.46□□□□□ -2.02
PRKDCP78527 AL133247.2-201ENST00000603236 482 ntBASIC2.46□□□□□ -2.02
PRKDCP78527 BNIP3P41-202ENST00000616656 861 ntBASIC2.46□□□□□ -2.02
PRKDCP78527 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
PRKDCP78527 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC2.46□□□□□ -2.02
PRKDCP78527 TCEANC2-201ENST00000234827 10436 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
PRKDCP78527 MDM4-205ENST00000391947 10008 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
PRKDCP78527 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
PRKDCP78527 RBM25-201ENST00000261973 6910 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
PRKDCP78527 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC2.46□□□□□ -2.02
PRKDCP78527 RPL7AP73-201ENST00000413490 353 ntBASIC2.46□□□□□ -2.02
PRKDCP78527 SDCBPP2-201ENST00000424643 885 ntBASIC2.46□□□□□ -2.02
PRKDCP78527 AC068196.1-201ENST00000456895 833 ntTSL 3 BASIC2.46□□□□□ -2.02
PRKDCP78527 AC128713.1-201ENST00000471495 306 ntBASIC2.46□□□□□ -2.02
PRKDCP78527 RN7SL20P-201ENST00000488827 297 ntBASIC2.46□□□□□ -2.02
PRKDCP78527 AC005242.1-201ENST00000585658 438 ntBASIC2.46□□□□□ -2.02
PRKDCP78527 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.46□□□□□ -2.02
PRKDCP78527 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC2.46□□□□□ -2.02
PRKDCP78527 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC2.46□□□□□ -2.02
PRKDCP78527 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC2.46□□□□□ -2.02
PRKDCP78527 AP003122.5-201ENST00000527668 3766 ntBASIC2.46□□□□□ -2.02
PRKDCP78527 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC2.46□□□□□ -2.02
PRKDCP78527 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
PRKDCP78527 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.46□□□□□ -2.02
PRKDCP78527 ANK2-212ENST00000506722 8051 ntAPPRIS ALT2 TSL 1 (best) BASIC2.46□□□□□ -2.02
PRKDCP78527 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC2.46□□□□□ -2.02
PRKDCP78527 HYDIN2-203ENST00000614586 13885 ntBASIC2.46□□□□□ -2.02
PRKDCP78527 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
PRKDCP78527 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC2.46□□□□□ -2.02
PRKDCP78527 RPS29P31-201ENST00000446147 164 ntBASIC2.46□□□□□ -2.02
PRKDCP78527 SEC22A-207ENST00000481965 673 ntTSL 3 BASIC2.46□□□□□ -2.02
PRKDCP78527 AC109329.2-201ENST00000519658 482 ntBASIC2.46□□□□□ -2.02
PRKDCP78527 AC019227.1-201ENST00000526902 510 ntBASIC2.46□□□□□ -2.02
PRKDCP78527 OR6R2P-201ENST00000609216 300 ntBASIC2.46□□□□□ -2.02
PRKDCP78527 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
PRKDCP78527 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC2.46□□□□□ -2.02
PRKDCP78527 RMST-202ENST00000541282 2099 ntTSL 2 BASIC2.46□□□□□ -2.02
PRKDCP78527 SAGE2P-201ENST00000420011 2126 ntBASIC2.46□□□□□ -2.02
PRKDCP78527 TOPORSLP1-201ENST00000467693 2102 ntBASIC2.46□□□□□ -2.02
PRKDCP78527 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
PRKDCP78527 AC006504.1-201ENST00000562493 3666 ntBASIC2.45□□□□□ -2.02
PRKDCP78527 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC2.45□□□□□ -2.02
PRKDCP78527 AP000641.1-201ENST00000531988 1639 ntBASIC2.45□□□□□ -2.02
PRKDCP78527 SNORA18.3-201ENST00000384122 132 ntBASIC2.45□□□□□ -2.02
PRKDCP78527 VN1R48P-201ENST00000448149 1036 ntBASIC2.45□□□□□ -2.02
PRKDCP78527 TRBV12-1-201ENST00000479785 344 ntBASIC2.45□□□□□ -2.02
PRKDCP78527 PSMA2P1-201ENST00000526365 646 ntBASIC2.45□□□□□ -2.02
PRKDCP78527 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC2.45□□□□□ -2.02
PRKDCP78527 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
PRKDCP78527 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC2.45□□□□□ -2.02
PRKDCP78527 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
PRKDCP78527 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC2.45□□□□□ -2.02
PRKDCP78527 INTS2-207ENST00000617492 5805 ntTSL 5 BASIC2.45□□□□□ -2.02
PRKDCP78527 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
PRKDCP78527 MAPK10-286ENST00000641208 8747 ntBASIC2.45□□□□□ -2.02
PRKDCP78527 RNU6ATAC15P-201ENST00000408279 121 ntBASIC2.45□□□□□ -2.02
PRKDCP78527 NPM1P48-201ENST00000436002 853 ntBASIC2.45□□□□□ -2.02
PRKDCP78527 AC099063.2-201ENST00000446360 662 ntBASIC2.45□□□□□ -2.02
PRKDCP78527 UBA52P3-201ENST00000491303 382 ntBASIC2.45□□□□□ -2.02
PRKDCP78527 AC021678.1-201ENST00000505195 936 ntBASIC2.45□□□□□ -2.02
PRKDCP78527 AC026782.2-201ENST00000510845 636 ntBASIC2.45□□□□□ -2.02
PRKDCP78527 AC004024.1-201ENST00000549244 247 ntBASIC2.45□□□□□ -2.02
PRKDCP78527 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC2.45□□□□□ -2.02
PRKDCP78527 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC2.45□□□□□ -2.02
PRKDCP78527 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
PRKDCP78527 PCDH15-231ENST00000617271 6425 ntAPPRIS P3 TSL 5 BASIC2.45□□□□□ -2.02
PRKDCP78527 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
PRKDCP78527 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC2.45□□□□□ -2.02
PRKDCP78527 LAMA2-205ENST00000617695 9678 ntAPPRIS ALT2 TSL 5 BASIC2.45□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 127 ms